BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888149 Length=2313 Score E Sequences producing significant alignments: (Bits) Value AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 3493 0.0 > AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:18339287-18355093 FORWARD LENGTH=10189 Length=10189 Score = 3493 bits (1891), Expect = 0.0 Identities = 2173/2307 (94%), Gaps = 27/2307 (1%) Strand=Plus/Plus Query 1 ATGGAAAAGTTGGTGAATGAAGGCCCAACTCTGCTGCAATTGCACAAGTGGGAACCTTCT 60 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 243 ATGGAAAAGTTGGTGAAGGAAGGCCCAACTCTGCTGCAACTGCACAAGTGGGAACCTTCT 302 Query 61 CAATTGCAACTGAAGCTCTCAGAATTTCGTGAGGCGTTTATTTCTCCGTCGAGGCAGTTG 120 ||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 303 CAATTTCAACTCAAGCTATCAGAATTTCGCGAGGCGTTTATTTCTCCGTCGAGGCAGTTG 362 Query 121 CTATTACTACTCTCGTACCACTCCCAAGCTTTGCTGCTTCCTTTGGTTGCAGGGAGGTCC 180 ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 363 TTATTACTACTCTCTTACCACTCCGAAGCTTTACTGCTTCCTTTGGTTGCAGGGAGGTCC 422 Query 181 ATTGGCAGTGAGGTTTCGGTAAGCT-GTCATAGTGAAGAGCCGAATAGTCCTACATTCTC 239 |||||||||||||||||| |||| | || ||| ||||||| |||||||||| ||| ||| Sbjct 423 ATTGGCAGTGAGGTTTCGTTAAG-TGGTGATAATGAAGAGTTGAATAGTCCTTCATGCTC 481 Query 240 TGGTGGGTCAGATCC------------A---CCTTCTGGATCAGGTGTTGGTTCTGGTGA 284 ||||||||||||||| | |||| ||||||||| |||||||||||||| Sbjct 482 TGGTGGGTCAGATCCAGAGAAAATTGAATCTCCTTGTGGATCAGGAGTTGGTTCTGGTGA 541 Query 285 GCCAGGTTTTGTAGATAATTTCAGTTCTAGTTGCAATAGTTTCCCTTTTATCTTTGATGT 344 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 542 GCCTGGTTTTGTAGATAATTGCAGTTCTAGTTGCAATAGTTTCCCTTTTATCTTTGATGC 601 Query 345 AAAGTCTGTTGCTTGGGGTAGTTGTGGAGATACTTACAATCGGCACAAAGATCCTTTGTT 404 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 602 AAAGTCTGTTGCTTGGGGTAGTTGTGGGGATACTTACAATCGGCACAAAGATCCTTTGTT 661 Query 405 TAGGGAATTGTTGTTTGTATCTGGAAATCATGGTGTTACGGTCCATGCTTTTTGCTGTAC 464 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 662 TAGGGAATTGTTGTTTGTATCTGGAAATCATGGTGTTACGGTCCACGCTTTTTGCTGTAC 721 Query 465 AAAAGATTCAAGTGACAGAGCCAAAGACAAACCTAATGGTGAGCTGAGGCATGGGGAGTG 524 |||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct 722 AAAAGATTTAAGTGACAAAGCCAAAGGCAAACCAAATGGTGAGCTGAGGCATGGGGAGTG 781 Query 525 GGTTGAATGGGGACCTTCTAGGCTTAATCAGAAATCAGAACATGAAAGAGTCTCTTCTTT 584 |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 782 GGTTGAGTGGGGACCTTCTAGGCTTAGTCAGAAATCAGAACCGGAAAGAGTCTCTTCTTC 841 Query 585 TGATGGCGCAAAGCAGTGGATGCAATCTTTTTTGATTGATTTGGAAACTACTGAAATTGA 644 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 842 TGATGGCTCAAAGCAGTGGATGCAATCTTTTTTGATTGATTTGGAAACTACTGTAATTGA 901 Query 645 GGGTATAAGACAGTCAAGGTTCCCTGAGAAGTCAGCGTTTCCTGCTTCTGCAGAGGTTGT 704 |||| ||||||||| |||||||||||||||||||||||||| | ||||||||||||||| Sbjct 902 TGGTACAAGACAGTCGAGGTTCCCTGAGAAGTCAGCGTTTCCGGGTTCTGCAGAGGTTGT 961 Query 705 TTCATTCAGCATATTAAATACTGATTTACCTTTCTCGAATCTTCTTTTCCAAGACAACTC 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 TTCATTCAGCATATTAAATACTGATTTACCTTTCTCGAATCTTCTTTTCCAAGACAACTC 1021 Query 765 CATACTTCAGAAGGATAATATGCCTGAGGATGGTAATGTAAATGACAATAATTTTCTCGT 824 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 CATACTTCCGAAGGATAATATGCCTGAGGATGGTAATGTAAATGACAATAATTTTCTCGT 1081 Query 825 AGCATCAGATCCAGCTGCTTTGGATGAAAAATCTCGAGCTGATATGCCCATAAACAATGC 884 |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1082 AGCATCTGATCCAACTGCTTTGGATGAAAAATCTCGAGCTGATATGCCCGTAAACAATGT 1141 Query 885 CAGTGTAAGCAGCTTGTACAGGTGCATCAAAGTTTTCTCCAGCGATTCTCATTCTCTGAT 944 |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1142 CAGTGTAAACAGTTTGTACAGGTGCATCAAAGTTTTCTCCAGCGATGCTCATTCTCTGAT 1201 Query 945 TGGATTTGTTATGGAGTTATCGGATTGTGCATCTACCCCTACAAGCAATGAAAACGAAAG 1004 |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| Sbjct 1202 TGGATTTGTTATGGAGTTATCGGATTGTGCATCTACGCCTAGAAGGAATGAAAACGAAAG 1261 Query 1005 AAGCAAGGGTAAGAGAATTGTCTTTGTTGCCAAGCTGTTTAGCTGGGGGATAGAATGGGC 1064 ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1262 AAGCAAGGGTAAGAGAAATATCTTTGTTGCCAAGCTGTTTAGCTGGGGGATAGAATGGGT 1321 Query 1065 CTCCCTTGTGAAGTTCGGGGAATCAAGTATTGGACCTACAAATGAGTGGGCAGATTTCCG 1124 ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 1322 CTCCCTTGTGAAGTTTGGTGAGTCAAGTATTGGACCTACAAATGAGTGGGCAGATTTCCG 1381 Query 1125 GCTATCTGATAAATTTGTTATCTGCCTCAGTGTTTCTGGTTTGATCTTTCTATATGATGT 1184 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1382 GCTATCCGATAACTTTGTTATCTGCCTCAGTGTTTCTGGTTTGATCTTTCTATATGATGT 1441 Query 1185 GAATTCTGGGGATTTTATTTCTCATGGGGATATCTTACAGACATGCAGTCGTGGATTGCA 1244 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1442 GAATTCTGGGGATTTTATTTCTCATGGGGATATCTTACAGACATGCGGTCGTGGATTGCA 1501 Query 1245 TTCTTCATCAGATATGCAAGAAGCAACTGCAGAAGTAGATCAGCGAAGTAACTTTCAAAA 1304 |||||||||||||| |||||||||||||||||||| |||||||| |||| |||||||||| Sbjct 1502 TTCTTCATCAGATAGGCAAGAAGCAACTGCAGAAGCAGATCAGCTAAGTGACTTTCAAAA 1561 Query 1305 TCGTGTTCCATCCATGTCTAAGACTTGCATTGTTGGTTCCGCAGACAGAAGAAAGTTTAG 1364 ||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||||| Sbjct 1562 TCGTGCTCCATCCATGTCTAAGACTTGTATTGTTGGTTCCACGGACAGAAGAAAGTTTAG 1621 Query 1365 AAAGCTTATCGTAGCTTCTCATACACCACTCATAGCTGCAGTTGACGAAAATGGTTTGGT 1424 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1622 AAAGCTTATTGTAGCTTCTCATACACCACTCATAGCTGCAGTTGACGAAAATGGTTTGGT 1681 Query 1425 ATATGTATCATGTGTTGATGACTTTGTTTCCAAGGAATACCACATGTCCGTGGAACCTAT 1484 |||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1682 ATATGTATTATGTGTCAATGACTTTGTTTCCAAGGAATACCACATGGCCGCGGAACCTAT 1741 Query 1485 TCCTGATTTACGTCATCTTGGGCTTGGAAGTCTGGTTGGGTGGAAAATCGGCGGCATGGA 1544 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1742 TCCTGATTTACTTCATCTTGGGCTTGGAAGTCTGGTTGGGTGGAAAATCGGCGGCATGGA 1801 Query 1545 CGTTGGCCAGAAAAAAGTGCACCATCCTAGCTCCTCTGGCTCTCGAGGTGAAGATGCTTT 1604 | |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 1802 CATTGGCCAGAAAAAAGTGCACCACCCTAGTTCCTCTGGGTCTCGAGGTGAAGATGCTTT 1861 Query 1605 TTCCAGGTGTGATCCTAGCTTTTCTGCTTCGGAAATCTCGATATCTGACCCATGTTTGGA 1664 ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1862 TTCCAGGCGTGATCTTAGCTTTTCTGCTTCGGAAATCTCGATGTCTGACCCATGTTTGGA 1921 Query 1665 AAGAAAACATAACAATTTTGATCGAAGAGCTGGTTACTCTGGTTCATGGTTGAGTGGTTT 1724 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1922 AAGACAACAGAACAATTTTGATCGAAGAGCTGGTTACTCTGGTTCATGGTTGAGTGGTTT 1981 Query 1725 TTCTGTTCAGCCTAAAACGAATTTGCTGAGACTTGAAAA-TTTCCGAAGAGACTCGCATG 1783 ||||| ||||||||||| ||| ||||| ||||||||| |||| ||||||||||||||| Sbjct 1982 TTCTGCACAGCCTAAAACAAATGGGCTGAAACTTGAAAAATTTC-GAAGAGACTCGCATG 2040 Query 1784 TCATGCGGAAGATGTTTCTATCCACTGAAAAATTAGGATTGGATGATAACATATGTTTTT 1843 ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 2041 TCACGCGGAAGATGTTTCTATCCGCCGAAAAATTAGGATTGGATGATAACATATGTTTTT 2100 Query 1844 CTCCAT-TGGGATTTACTCATTTCTCTAGAAAGTATACAAATAAGGACGATCGAAGCTGT 1902 |||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2101 CTCCATATGG-ATTCACTCATTTCTCTAGAAAGTATACAAATAAGGATGATCGAAGCTGT 2159 Query 1903 AAGATTTTTCATTATAGTCTGCAGACGCATATGACTACGAGAGATGATAGTTATTTGAAT 1962 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2160 AAGATTTTTCATTATAGTCTGCAGACGCATATGACTGCGAGAGATGATAGTTATTTGAAT 2219 Query 1963 TACAATGTCAACAATGA-TTCTATTCAAGGTGCAGAAGAGAGTTTCATAGGAGAATCAGT 2021 ||| |||||||||| || |||||||||||||||||| |||| |||||||||||||||||| Sbjct 2220 TACGATGTCAACAA-GAATTCTATTCAAGGTGCAGAGGAGAATTTCATAGGAGAATCAGT 2278 Query 2022 TGGTTGCTCTTTCCAAGGATTTCTTTATTTGGTGACTTGT-AGTGGTCTTTCAGTTTTTC 2080 |||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||| Sbjct 2279 TGGTTGCTCTTTCCAAGGATTTCTTTTTTTGGTGACTTGTGA-TGGTCTTTCGGTTTTTC 2337 Query 2081 TCCCTTCTATCTCAATAACCTCAAATTACCCAACTGTTGAGGCCATTGAATATCTGCAGC 2140 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2338 TCCCTTCTATCTCAATAACCTCAAATTACCCAACTATTGAGGCCATTGAATATCTGCAGC 2397 Query 2141 CACTCCAGACCACTGTCATGGGATACCAGGAAAGAGACGATTTGAG-AGCAGGGGAATCA 2199 || |||||||||||||||||||||||| || ||||||||||||| | ||||||||||||| Sbjct 2398 CATTCCAGACCACTGTCATGGGATACCGGGGAAGAGACGATTTG-GCAGCAGGGGAATCA 2456 Query 2200 CGTTTTCCTTGGCAAGTTGAGGTCATAGATAGAGTTATCTTGTTTGAAGGCCCTGAAGTA 2259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2457 CGTTTTCCTTGGCAAGTTGAGGTCATAGATAGAGTTATCTTGTTTGAAGGCCCTGAAGTT 2516 Query 2260 GCAGATCATGTATGCTTGGAAAATGGT 2286 ||||||||| ||||||||||||||||| Sbjct 2517 GCAGATCATTTATGCTTGGAAAATGGT 2543 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114808646415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5