BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888526 Length=2148 Score E Sequences producing significant alignments: (Bits) Value AT4G35440.2 | Symbols: CLC-E | chloride channel E | chr4:168359... 3360 0.0 > AT4G35440.2 | Symbols: CLC-E | chloride channel E | chr4:16835986-16839375 REVERSE LENGTH=2661 Length=2661 Score = 3360 bits (1819), Expect = 0.0 Identities = 2014/2106 (96%), Gaps = 21/2106 (1%) Strand=Plus/Plus Query 1 ATGGCAGCCACGCTTCCACTCTGTGCTGCTCTCCGATCTCCCGTCTCTTCCCGGAGATTC 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 31 ATGGCAGCCACGCTTCCACTCTGTGCTGCCCTCCGATCTCCCGTCTCTTCCCGGAGATTC 90 Query 61 TCGCCGATTCACAAAACCAATGCTCATCTTCAGTAT-AATGTCTTCCTTTCACCGTTGAC 119 | || |||||||||||| | | || | |||||| | |||||| |||||||| | | Sbjct 91 GCTCCAATTCACAAAACCGACGTTCCTTTTCAGT-TCAATGTCGTCCTTTCA-C-----C 143 Query 120 GTCACCATTGTTCGGTTCCGTCGCTATTCGCGGCAGAATTTTACCGCGTTTACCGGCGGC 179 || || |||||||||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 144 GT-----TT-TTCGGTTCCGTCGCTATTGGCGGTAGAATTTTCCCGCGTTTACCGGCGGC 197 Query 180 GAAGCAGGAGATTGATCAGCAGGATGAGGTTGGATTTGATCAGCAGCCGTCTCAGGAGCT 239 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 198 GAAGCAGGAGACTGAT---CAGGATGAGGTTGGATTTGATCAGCAGCCGTCTCAGGAGCT 254 Query 240 TACGATAGCGTCGGCGTGTTTGGTTGGTGTTCTCACTGGAGTTAGTGTGGTTCTATTCAA 299 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 TGCGATAGCGTCGGCTTGTTTGGTTGGTGTTCTCACTGGAGTTAGTGTGGTTCTATTCAA 314 Query 300 CAACTGTGTTCACTTGCTTCGAGA-TTTCTCCTGGGATGGGATTCCTGATCGTGGAGCTT 358 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 315 CAACTGTGTTCACTTGCTTCGAGACTTT-TCCTGGGATGGGATTCCTGATCGTGGAGCTT 373 Query 359 CGTGGCTTAGAGAGGCACCGATCGGTTCCAATTGGTTGCGTGTTATCCTTGTTCCGACTA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 CGTGGCTTAGAGAGGCACCGATCGGTTCCAATTGGTTGCGTGTTATCCTTGTTCCGACTA 433 Query 419 TCGGCGGTTTGGTGGTGAGCGTCCTCAATCAGCTTCGAGAATCTGCCGGAGAATCCAGC- 477 |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| | | Sbjct 434 TCGGCGGTTTGGTGGTGAGCATCCTCAATCAGCTTCGAGAATCTGCTGGAAAATCTA-CT 492 Query 478 GGAGATTCTGATTCTAGTCTCGATCGCGTAAAGGCAGTGTTGCGTCCTTTCCTTAAGACT 537 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 GGAGATTCTCATTCTAGTCTCGATCGCGTAAAGGCAGTGTTGCGTCCTTTCCTTAAGACT 552 Query 538 GTTGCCGCATGTGTGACGCTTGGGACTGGAAATTCGCTGGGGCCGGAAGGTCCTAGTGTT 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 553 GTTGCCGCATGTGTGACGCTTGGGACTGGAAATTCGCTGGGGCCGGAAGGTCCAAGTGTT 612 Query 598 GAAATTGGCGCGTCAATCGCTAAAGGAGTGAATTCTCTGTTCAATAAAAGTCCTCAGACT 657 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 613 GAAATTGGAGCGTCAATCGCTAAAGGTGTGAATTCTCTGTTCAATAAAAGTCCTCAGACT 672 Query 658 GGCTTCTCACTTCTTGCTGCTGGCTCAGCGGCTGGAATTTCCTCTGGGTTCAATGCAGCT 717 ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct 673 GGCTTCTCACTTCTTGCCGCTGGCTCAGCTGCTGGCATTTCCTCTGGGTTCAATGCAGCT 732 Query 718 GTTGCTGGATGCTTCTTTGCAGTTGAATCCGTTTTGTGGCCTTCTTCATCTACTGATTCA 777 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 733 GTGGCTGGATGCTTCTTTGCAGTTGAATCCGTTTTGTGGCCTTCTTCATCAACTGATTCA 792 Query 778 TCAACATCACTTCCAAACACAACTTCTATGGTTATTCTTAGTGCTGTTACTGCTTCTGTG 837 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 793 TCAACTTCACTTCCAAACACAACTTCTATGGTTATTCTTAGTGCTGTTACTGCTTCTGTG 852 Query 838 GTGTCGGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGC 897 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 GTTTCCGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGC 912 Query 898 TCTCCTGGAGAACTTCCACTCTATCTTTTATTGGGCGCTCTGTGTGGCCTGGTCTCGTTG 957 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 913 TCTCCTGGAGAACTTCCACTCTATCTTTTATTGGGCGCTCTGTGTGGCTTGGTCTCGTTG 972 Query 958 GCATTATCTCGATGTACATCATCCATGACATCTGCTGTTGACAGTCTCAACAAGGATGTT 1017 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 973 GCATTATCTCGATGTACATCATCCATGACATCTGCTGTTGACAGTCTTAACAAGGATGCT 1032 Query 1018 GGGATACCAAAGGCTGTATTTCCTGTAGTGGGTGGCTTAACTGTTGGAATCATAGCTTTG 1077 ||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||| Sbjct 1033 GGGATACCAAAGGCTGTATTTCCTGTAATGGGTGGATTAAGTGTTGGTATCATAGCTTTG 1092 Query 1078 GTATACCCTGAAGTCTTATATTGGGGTTTTCAGAACGTGGATATTTTGTTGGAGAAACGT 1137 |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1093 GTATACCCTGAAGTATTATACTGGGGTTTTCAGAATGTGGATATTTTGTTGGAGAAACGT 1152 Query 1138 CCATTTGTAAAGGGCCTGTCAGCTGATCTTTTGCTTCAGCTGGTAGCGGTCAAAATAGCT 1197 |||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1153 CCATTTGTGAAGGGTCTTTCAGCTGATCTTTTGCTTCAGCTGGTAGCGGTCAAGATAGCT 1212 Query 1198 GCAACTGCATGGTGTCGGGCTTCTGGACTTGTCGGTGGATACTATGCTCCTTCTCTCTTT 1257 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 GCAACCGCATGGTGTCGGGCTTCTGGACTTGTCGGTGGATACTATGCTCCTTCTCTCTTT 1272 Query 1258 ATTGGCGGGGCAGCAGGAATGGCCTATGGAAAGTTTATTGGACTTGCTTTGGCTCAGAAC 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1273 ATTGGCGGGGCAGCAGGAATGGCCTATGGAAAGTTTATTGGACTTGCTTTGGCTCAGAAC 1332 Query 1318 CCTGAAATCAATCTCTCTATCCTGGAAGTAGCATCTCCACAAGCTTATGGTCTGGTTGGA 1377 ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1333 CCTGATTTCAATCTCTCTATCTTGGAAGTGGCATCTCCACAAGCTTATGGTCTGGTTGGA 1392 Query 1378 ATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCGGTACTACTGCTATTT 1437 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1393 ATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCAGTACTACTGCTATTT 1452 Query 1438 GAACTTACACAGGATTATCGTATAGTGTTACCTCTACTGGGAGCTGTAGGCATGTCTTCA 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1453 GAACTTACACAGGATTATCGTATAGTGTTACCTCTACTGGGAGCTGTAGGCATGTCTTCA 1512 Query 1498 TGGATTACATCTGGACAATcaaagagacaagaaactagagaaacaaaagaaactaggaaa 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1513 TGGATTACATCTGGACAATCAAAGAGACAAGAAACTAGAGAAACAAAAGAAACTAGGAAA 1572 Query 1558 agaaagaaccaagaagCTGTACAGTCTCTGACGTCATCTGATGATGGATTATCAACGAAT 1617 ||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1573 AGAAAGAGCCAAGAAGCTGTACAGTCTCTGACGTCATCTGATGATGAATCATCAACGAAT 1632 Query 1618 AACCTTTGTGAAGTTGAAAGTTCTCTTTGCCTTGATGATTCACTCAACCAAGCTCAGGAG 1677 ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| Sbjct 1633 AACCTTTGTGAAGTTGAAAGTTCTCTTTGCCTTGATGATTCTCTCAACCAATCTGAGGAG 1692 Query 1678 CTGCCGAAGAGTATATTTGTTTCAGAAGCCATGCGAACAAGATTTGCCACAGTTATGATG 1737 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1693 CTGCCGAAGAGTATTTTTGTTTCAGAAGCCATGCGAACAAGATTTGCGACAGTTATGATG 1752 Query 1738 AGCACTTCTTTGGAAGAGACATTAACTCGTATGCTGATAGAGAAACAATCCTGCGCCTTG 1797 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1753 AGCACTTCTTTGGAAGAGGCATTAACTCGTATGCTGATAGAGAAACAATCCTGCGCCTTG 1812 Query 1798 ATTGTTGACCCTGACAATATCTTTCTCGGTATACTTACACTTTCAGACATTCAGGAATTC 1857 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1813 ATTGTTGATCCTGACAATATCTTTCTCGGTATACTTACACTTTCAGACATTCAGGAATTC 1872 Query 1858 AGCAAAGCAAGAAAAGAAGGAAATAAAAGACCCAAGGATATTTTTGTTAATGATATATGT 1917 |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct 1873 AGCAAAGCAAGAAAAGAAGGAAATAATAGACCCAAGGATATTTTTGTTAATGACATCTGT 1932 Query 1918 TCGAGGAGTGGAGGAAAATGTAAAGTGCCATGGACTGTTACACCTGATATGGATCTTCTC 1977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1933 TCGAGGAGTGGAGGAAAATGTAAAGTGCCATGGACTGTTACACCTGATATGGATCTTCTC 1992 Query 1978 GCTGCCCAAACAATCATGAACAAGCATGAAATTTCCCATGTTGCAGTTGTTTCAGGCAGC 2037 |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| Sbjct 1993 GCTGCCCAAACAATCATGAACAAGCATGAACTTTCTCATGTTGCAGTCGTTTCAGGCAGC 2052 Query 2038 ATTGATGCTCGCAGAATACACCCTGTTGGGGTCCTAGATAGAGAATGTATCACTCTAACG 2097 |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2053 ATTGATGCTCCCAGAATACACCCTGTTGGGGTCCTGGATAGAGAATGTATCACTCTAACA 2112 Query 2098 CGCAGG 2103 |||||| Sbjct 2113 CGCAGG 2118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106525556490 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5