BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888595 Length=495 Score E Sequences producing significant alignments: (Bits) Value AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0... 815 0.0 AT2G16510.1 | Symbols: | ATPase, F0/V0 complex, subunit C prot... 643 0.0 AT4G38920.1 | Symbols: AVA-P3, ATVHA-C3, VHA-C3 | vacuolar-type... 527 4e-149 AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V... 444 4e-124 > AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0 complex, subunit C protein | chr4:16567824-16569295 REVERSE LENGTH=1024 Length=1024 Score = 815 bits (441), Expect = 0.0 Identities = 478/496 (96%), Gaps = 2/496 (0%) Strand=Plus/Plus Query 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 131 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCC 190 Query 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 GCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 250 Query 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 251 GCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATG 310 Query 181 GCTGGTGTTTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 240 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 GCTGGAGTGTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 370 Query 241 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCT 300 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 371 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCT 430 Query 301 TGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTC 360 ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 431 TGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTC 490 Query 361 AGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTCGGGATGATTCTTATCCTTATCTTT-GC 419 |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || Sbjct 491 AGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTAT-TTTCGC 549 Query 420 AGAAGCGCTCGCTCTCTACGGGCTTATTGTGGGAATCATCCTTTCCTCACGAGCTGGCCA 479 ||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 550 AGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTTTCCTCACGAGCTGGCCA 609 Query 480 GTCTAGAGCGGAATGA 495 ||||||||| |||||| Sbjct 610 GTCTAGAGCTGAATGA 625 > AT2G16510.1 | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr2:7159629-7160892 REVERSE LENGTH=954 Length=954 Score = 643 bits (348), Expect = 0.0 Identities = 448/497 (90%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60 |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||| Sbjct 82 ATGTCTACGTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGGCGCCGCCGCC 141 Query 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 142 GCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTG 201 Query 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180 ||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||| Sbjct 202 GCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGTTATG 261 Query 181 GCTGGTGTTTTGGGTATCTATGGA-TTGATCATTGCTGTTATCATCAGTACCGGGATTAA 239 ||||||||||||||||| |||||| || || |||||||||||||| |||||||| || || Sbjct 262 GCTGGTGTTTTGGGTATTTATGGACTT-ATTATTGCTGTTATCATTAGTACCGGCATCAA 320 Query 240 CCCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGC 299 || |||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| Sbjct 321 TCCTAAGGCTAAGTCTTACTACCTATTTGACGGATACGCTCACCTTTCGTCTGGTCTTGC 380 Query 300 TTGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGT 359 ||||||||||||||| || |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 381 TTGTGGTCTTGCTGGACTCTCAGCTGGTATGGCTATTGGAATTGTTGGTGATGCGGGTGT 440 Query 360 CAGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTCGGGATGATTCTTATCCTTATCTTTGC 419 |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 441 TAGGGCAAATGCTCAGCAGCCTAAGCTATTTGTTGGGATGATTCTTATCCTTATCTTTGC 500 Query 420 AGAAGCGCTCGCTCTCTACGGGCTTATTGTGGGAATCATCCTT-TCCTCACGAGCTGGCC 478 |||||||||||||| ||||| || ||||| || ||||| || || || |||||||| | Sbjct 501 GGAAGCGCTCGCTCTATACGGCCTAATTGTAGGCATCATT-TTATCTTCTCGAGCTGGTC 559 Query 479 AGTCTAGAGCGGAATGA 495 |||| ||||| |||||| Sbjct 560 AGTCCAGAGCAGAATGA 576 > AT4G38920.1 | Symbols: AVA-P3, ATVHA-C3, VHA-C3 | vacuolar-type H(+)-ATPase C3 | chr4:18147211-18149267 FORWARD LENGTH=1028 Length=1028 Score = 527 bits (285), Expect = 4e-149 Identities = 429/499 (86%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60 |||||||| ||||| |||||||| || ||||| |||||||||||||| ||||| || || Sbjct 120 ATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTTCGGCTTCCTTGGCGCTGCCGCT 179 Query 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120 || ||||||||||| |||||||||||||| || || || |||||||||||||| || ||| Sbjct 180 GCGCTCGTCTTCTCATGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTG 239 Query 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180 || |||||||| || |||||||| |||||||| ||||| ||||||||||| ||||||||| Sbjct 240 GCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGTTATG 299 Query 181 GCTGGTGTTTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 240 |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 300 GCTGGTGTGTTGGGTATCTATGGTTTGATTATTGCTGTTATCATCAGTACCGGGATTAAC 359 Query 241 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCT 300 ||||||||||| || ||||||||||| || ||||| || ||||| || |||||||||||| Sbjct 360 CCCAAGGCTAAATCCTACTACCTCTTCGACGGATATGCTCATCTCTCTTCTGGTCTTGCT 419 Query 301 TGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTC 360 ||||| || ||||||||||||||||| |||||||| || || || || ||||| |||||| Sbjct 420 TGTGGGCTAGCTGGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTC 479 Query 361 AGGGCAAATGCTCAGCAGCCTAAGCTCTTT-GTCGGGATGATTCTTATCCTTATCTTT-G 418 ||||| |||||||| ||||| ||||| ||| || || |||||||||||||| || ||| | Sbjct 480 AGGGCCAATGCTCAACAGCCAAAGCT-TTTCGTTGGTATGATTCTTATCCTCAT-TTTCG 537 Query 419 CAGAAGCGCTCGCTCTCTACGGGCTTATTGT-GGGAATCATCCTT-TCCTCACGAGCTGG 476 | ||||| || ||||| ||||| || || || |||| |||| || ||||| |||||||| Sbjct 538 CTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGA-TCATT-TTGTCCTCCCGAGCTGG 595 Query 477 CCAGTCTAGAGCGGAATGA 495 ||||| ||||| |||||| Sbjct 596 TCAGTCCAGAGCCGAATGA 614 > AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913229-6914594 FORWARD LENGTH=858 Length=858 Score = 444 bits (240), Expect = 4e-124 Identities = 406/488 (83%), Gaps = 4/488 (1%) Strand=Plus/Plus Query 10 TTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCCGCACTCGTC 69 ||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||| Sbjct 101 TTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTT 160 Query 70 TTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATG 129 ||||||||||||||||| || || || || || ||||| || |||||||| || || ||| Sbjct 161 TTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATG 220 Query 130 GGAGTTATGAGGCCTGAG-TTGGTCATGAAATCTATTGTCCCTGTTGTTATGGCTGGTGT 188 || || ||||| || ||| || || |||||||| ||||| ||||||||||||||||| || Sbjct 221 GGTGTGATGAGACCAGAGCTT-GTGATGAAATCGATTGTTCCTGTTGTTATGGCTGGAGT 279 Query 189 TTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAACCCCAAGGC 248 ||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 280 TTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATCAACCCTAAGGC 339 Query 249 TAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCTTGTGGTCT 308 ||||||||||| || || ||||| || || ||||| || || ||||||||||||||||| Sbjct 340 CAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCT 399 Query 309 TGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTCAGGGCAAA 368 |||||||| || || || ||||| ||||| ||||| || ||||||||||| || || || Sbjct 400 CGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGAGCGAA 459 Query 369 TGCTCAGCAGCCTAAGCTCTTTGTCGGGA-TGATTCTTATCCTTATCTTTGCAGAAGCGC 427 ||| || || |||||| | ||||| |||| ||||||| || || |||||||| ||||| | Sbjct 460 TGCACAACAACCTAAGTTGTTTGT-GGGAATGATTCTGATTCTCATCTTTGCTGAAGCAC 518 Query 428 TCGCTCTCTACGGGCTTATTGTGGGAATCATCCTTTCCTCACGAGCTGGCCAGTCTAGAG 487 | || || ||||| || ||||| || |||||||| || || |||||||| |||||||||| Sbjct 519 TTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGTCAGTCTAGAG 578 Query 488 CGGAATGA 495 | || ||| Sbjct 579 CCGAGTGA 586 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23610049090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5