BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888769
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33220.1 | Symbols: PME44, ATPME44 | pectin methylesterase 4... 2516 0.0
> AT4G33220.1 | Symbols: PME44, ATPME44 | pectin methylesterase
44 | chr4:16022439-16026360 FORWARD LENGTH=1875
Length=1875
Score = 2516 bits (1362), Expect = 0.0
Identities = 1509/1581 (95%), Gaps = 6/1581 (0%)
Strand=Plus/Plus
Query 1 ATGTCATGTTTGAAGTATTTCTTGATCTTCTTGATATTGGGTCTGTGTGTCTCATCGGAG 60
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 68 ATGTCATGTTTGAAGTATTTCTTGATCTTATTGATGTTGGGACTGTGTGTCTCATCGGAG 127
Query 61 GAGAATTTGCAATATGACTACTTGAAAGTTCCGGCAAGCGAGTTTGTGAGCTCCATAAAC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GAGAATTTTCAATATGACTACTTGAAAGTTCCGGCAAGCGAGTTTGTGAGCTCCATAAAC 187
Query 121 ACAATTGTGGAAGTAATAAGACAAGTGAGTTCGATTTTGTCTCAGTTCGCGGATTTTAGC 180
|||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 188 ACAATTGTGGTAGTGATAAGACAAGTGAGTTCAATTTTGTCTCAGTTCGCTGATTTCAGC 247
Query 181 GGAGGCCGCCGGCTGCAGAATGCGGTTTCCGATTGCCTTGATCTGCTTGACTTTTCTTCA 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GGAGATCGCCGGCTGCAGAATGCGGTTTCCGATTGCCTTGATCTGCTTGACTTTTCTTCA 307
Query 241 GAGGAGCTGAGTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGGTAAGGGCAACGGAACA 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAGGAGCTCACTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGGTAAGGGCAACGGAACA 367
Query 301 GGGGACGTGGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGACACT 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 368 GGGGACGTTGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGCCACT 427
Query 361 TGTATGGAAGGCTTCCAGGGTACCTCTGGTCTCGTCAAATCCCTTGTCGCTGGCAGTCTT 420
||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 428 TGTATGGAAGGCTTCGATGGTACCTCTGGTCTCGTAAAATCCCTTGTCGCTGGCAGTCTC 487
Query 421 GATCAACTATATTCTATGCTTAGGGAATTGTTACCACTTGTGCAACCCGAGCAGAAACCC 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 488 GATCAACTATATTCTATGCTTAGGGAATTGTTACCACTTGTGCAACCAGAGCAGAAACCC 547
Query 481 AAGCCAATTTCTAAACCTGGCCCTATTGCTAAAGGACCAAAGGCCCCACCTGCCCGCAAA 540
||| | ||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||
Sbjct 548 AAGGCTGTTTCTAAACCTGGCCCTATTGCTAAAGGACCGAAGGCACCACCTGGCCGTAAA 607
Query 541 CTTAGAGACACCGACGACGACGAAAGCCTTCAATTCCCAGACTGGGTTAGATCGGAAGAT 600
|| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 608 CTCAGAGACACCGACGAAGACGAAAGCCTTCAATTCCCAGACTGGGTCAGACCGGACGAT 667
Query 601 CGCAAACTATTAGAGA-CAAACGGTAGGAGTTACGACGTTTGCGTAGCATTGGATGGGAC 659
|| ||||||||||| | |||||||||||| |||||||||| | |||||||||||||||||
Sbjct 668 CGTAAACTATTAGA-ATCAAACGGTAGGACTTACGACGTTAGTGTAGCATTGGATGGGAC 726
Query 660 ATGCAACTTCACAAAGATAATGGACGCCATTAAGGAAGCTCCTGATTATAGCTCCACACG 719
| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 727 AGGCAACTTCACAAAGATAATGGACGCCATAAAGAAAGCTCCTGATTATAGCTCGACACG 786
Query 720 TTTCGTTATATACA-TAAAAAAGGGTTTATATTTGGAGAATGTTGAGATCAAGAAGAAGA 778
|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 787 TTTCGTCATATACATTAAAAAA-GGTTTATATTTGGAGAATGTTGAGATCAAGAAGAAGA 845
Query 779 AATGGAACATTGTAATGATAGGTGATGGCATTGATGTGACTGTTATTTCCGGTAACCGCA 838
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 846 AATGGAACATTGTAATGTTAGGTGATGGCATTGACGTGACTGTTATTTCCGGTAACCGCA 905
Query 839 GTTTCATTGACGGGTGGACCACTTTCCGATCAGCTACATTTGCGGTAAGCGGAAGAGGAT 898
| ||||| || || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 906 GCTTCATCGATGGTTGGACCACTTTCCGATCAGCTACATTCGCGGTAAGCGGAAGAGGAT 965
Query 899 TCCTAGCAAGAGATATAACGTTCCAGAACACAGCGGGGCCAGAGAAGCATCAGGCGGTAG 958
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 966 TCTTAGCAAGAGATATAACGTTCCAGAACACAGCAGGGCCAGAGAAGCATCAGGCGGTAG 1025
Query 959 CACTGAGATCAGACTCTGACCTCTCTGTGTTCTACAGATGTGCGATGAGGGGTTATCAAG 1018
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1026 CACTGAGATCAGACTCTGACCTCTCTGTGTTCTTCAGATGTGCGATGAGGGGTTATCAAG 1085
Query 1019 ATACACTCTACACGCACACCATGCGTCAGTTCTACCGTGAGTGCACCATCACGGGAACAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 ATACACTCTACACGCACACCATGCGTCAGTTCTACCGTGAGTGCACCATCACGGGAACAG 1145
Query 1079 TAGATTTTATATTTGGGGATGGGACTGTTGTGTTTCAAAATTGTCAAATTTTGGCTAAAA 1138
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1146 TAGATTTTATATTTGGGGATGGGACTGTTGTGTTTCAAAACTGTCAAATTTTGGCTAAAA 1205
Query 1139 GAGGACTCCCTAACCAAAAGAACACCATCACTGCACAAGGCCGGAAAGATGTGAACCAAC 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1206 GAGGACTCCCTAACCAAAAGAACACCATCACTGCACAAGGCCGGAAAGATGTCAACCAAC 1265
Query 1199 CCTCAGGATTCTCAATTCAATTCAGCAATATCTCGGCGGACGCAGATTTGGTCCCATACC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 CCTCAGGATTCTCAATTCAATTCAGCAATATCTCGGCGGACGCAGATTTGGTCCCATACC 1325
Query 1259 TAAACACGACACAG-ACGTATCTAGGAAGGCCATGGAAGCTATATTCAAGAACAGTTTTC 1317
||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1326 TAAACACGACA-AGGACGTATCTAGGAAGGCCATGGAAGCTATATTCGAGAACGGTTTTC 1384
Query 1318 ATTAGGAATAACATGAGCGACGTTGTGAGACCAGAAGGATGGCTCGAGTGGAACGCTGAC 1377
|||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1385 ATTAGGAACAATATGAGCGACGTTGTGAGACCCGAAGGATGGCTTGAGTGGAACGCTGAT 1444
Query 1378 TTTGCGTTGGACACACTCTTCTACGGAGAGTTCATGAACTACGGGCCTGGTTCAGGACTA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TTTGCGTTGGACACACTCTTCTACGGAGAGTTCATGAACTACGGGCCTGGTTCAGGACTC 1504
Query 1438 AGCGGCCGAGTCAAATGGCCTGGTTACCACGTCTTTAACAACTCGGAGCAGGCTAACAAC 1497
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1505 AGCAGCCGAGTCAAATGGCCTGGTTACCACGTCTTTAACAACTCGGATCAGGCTAACAAC 1564
Query 1498 TTCACCGTTTCTCAGTTCATTAAAGGAAATCTTTGGCTGCCTTCTACGGGGGTAACGTTT 1557
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1565 TTCACCGTTTCTCAGTTCATTAAAGGAAATCTTTGGCTGCCTTCTACGGGAGTAACGTTT 1624
Query 1558 AGTGACGGCTTGAATATCTAA 1578
||||| |||||| ||||||||
Sbjct 1625 AGTGATGGCTTGTATATCTAA 1645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5