BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889417

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27360.1 | Symbols:  | Dynein light chain type 1 family prot...   536    4e-152


> AT4G27360.1 | Symbols:  | Dynein light chain type 1 family protein 
| chr4:13693957-13694658 FORWARD LENGTH=528
Length=528

 Score =  536 bits (290),  Expect = 4e-152
 Identities = 319/333 (96%), Gaps = 1/333 (0%)
 Strand=Plus/Plus

Query  1    ATGTTAGAAGGGAAAGCAGTAATGGGTGAGACAGATATGAAGCAAACAATGAAGGAAGAT  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  76   ATGTTAGAAGGGAAAGCAGTAATGGGTGATACAGATATGAAGCAAACAATGAAGGAAGAT  135

Query  61   GCTCTTAGTTTGGCCTCCAAAGCCCTTGATTGCTTTGATGTCACCGAACCCACCCAAATC  120
            |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| 
Sbjct  136  GCTCTTAGTTTGGCCTCCAAAGCCCTTGATTGCTTTGATGTCACCGAACCTACTCAAATT  195

Query  121  GCACGTTTCATCAAGAAGGAATTTGATAGTAGTTACGGATCGGGGTGGCAGTGCATCGTC  180
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  196  GCCCGTTTCATCAAGAAGGAATTTGATAGAAGTTACGGATCGGGGTGGCAGTGCATCGTG  255

Query  181  GGGACGCATTTTGGATCTTTCGTGACTCATTGCAGTGGCTGCTTCATCCATTTCTCAGTT  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  GGGACGCATTTCGGATCTTTCGTGACTCATTGCAGTGGCTGCTTCATCCATTTCTCAGTT  315

Query  241  GGCACCCTTACCATTTTGCTTTTTAAGGGATCAGTAGGTGAACCGGCGCCCC-GGACCGA  299
            |||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct  316  GGCAGCCTTACCATTTTGCTTTTTAAGGGATCAGTCGGTGAACCGGCCCCCCCGGACCGA  375

Query  300  CGGTCTAGCTAATTTAGACAGTATTGTAAAATA  332
             | ||||||||||||||||||||||||||||||
Sbjct  376  TGCTCTAGCTAATTTAGACAGTATTGTAAAATA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5