BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg889976 Length=414 Score E Sequences producing significant alignments: (Bits) Value AT4G21980.2 | Symbols: APG8A, ATG8A | Ubiquitin-like superfamil... 688 0.0 AT4G04620.1 | Symbols: ATG8B | Ubiquitin-like superfamily prote... 416 8e-116 AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily prote... 333 8e-91 > AT4G21980.2 | Symbols: APG8A, ATG8A | Ubiquitin-like superfamily protein | chr4:11655613-11657034 FORWARD LENGTH=894 Length=894 Score = 688 bits (372), Expect = 0.0 Identities = 401/415 (97%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 1 ATGATATTTGCTTGCTTGAAATTTGCAGAGACTAATCGAATCGCCATGGCTAAGAGTTCC 60 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 256 ATGATCTTTGCTTGCTTGAAATTCGCAGAGACTAATCGAATCGCAATGGCTAAGAGTTCC 315 Query 61 TTCAAGATCTCTAACCCTCTCGAGGCAAGAATGAGTGAATCTTCTCGAATCAGAGAGAAG 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 316 TTCAAGATCTCTAACCCTCTCGAGGCAAGGATGAGTGAATCTTCTCGAATCAGAGAGAAG 375 Query 121 TACCCTGACAGAATTCCCGTGATTGTGGAAAAGGCTGGACAAAGTGATGTTCCTGACATT 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 376 TACCCTGACAGAATTCCCGTGATTGTGGAGAAGGCTGGACAAAGTGATGTTCCTGACATT 435 Query 181 GACAAGAAGAAGTATCTTGTACCAGCAGATCTAACAGTTGGACAATTTGTATATGTGGTT 240 |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct 436 GACAAGAAGAAGTATCTTGTACCAGCTGATCTAACAGTGGGACAATTTGTATACGTGGTT 495 Query 241 CGCAAAAGAATCAAGCTTGGAGCTGAGAAAGCTATCTTTGTCTTTGTTAAGAACACATTG 300 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 496 CGTAAAAGAATCAAGCTTGGAGCTGAGAAAGCTATTTTTGTCTTTGTTAAGAACACATTG 555 Query 301 CCTCCAACTGCTGCATTGATGTCTGCAATCTATGAAGAACACAAAGATGAAGATGGGTTC 360 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 556 CCTCCAACTGCTGCATTGATGTCTGCGATCTATGAAGAACACAAAGATGAGGATGGGTTC 615 Query 361 CTCTACATGACTTACAGTGGAGAGAACACTTTTGGAT-TCTTTACCGTTGCTTGA 414 ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 616 CTCTACATGACTTACAGTGGAGAGAACACTTTTGGATCTCTT-ACCGTTGCTTGA 669 > AT4G04620.1 | Symbols: ATG8B | Ubiquitin-like superfamily protein | chr4:2328496-2330200 REVERSE LENGTH=725 Length=725 Score = 416 bits (225), Expect = 8e-116 Identities = 323/371 (87%), Gaps = 4/371 (1%) Strand=Plus/Plus Query 27 AGAGACTAATCGAATCGCCATGGCTAAGAGTTCCTTCAAGATCTCTAACCCTCTCGAGGC 86 ||| ||||| |||||| ||||| |||| ||||||||| | ||||| ||||| ||| Sbjct 171 AGATACTAACCGAATCATCATGGAGAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAGAT 230 Query 87 AAGAATGAG-TGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGATTG 145 |||||| | ||| ||| |||| ||||||| ||| |||||||| ||| |||||||||||| Sbjct 231 GAGAATG-GCTGAGTCTACTCGTATCAGAGCGAAATACCCTGAAAGAGTTCCCGTGATTG 289 Query 146 TGGAAAAGGCTGGACAAAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAG 205 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 TGGAAAAAGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAG 349 Query 206 CAGATCTAAC-AGTTGGACAATTTGTATATGTGGTTCGCAAAAGAATCAAGCTTGGAGCT 264 | |||||||| | |||| |||||||| || || || | ||||||||||||||||||||| Sbjct 350 CTGATCTAACCA-TTGGCCAATTTGTGTACGTTGTGAGGAAAAGAATCAAGCTTGGAGCT 408 Query 265 GAGAAAGCTATCTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTCT 324 || ||||| |||||||||||||| ||||||||||| || |||||||| |||||||||||| Sbjct 409 GAAAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCACCAACTGCGGCATTGATGTCT 468 Query 325 GCAATCTATGAAGAACACAAAGATGAAGATGGGTTCCTCTACATGACTTACAGTGGAGAG 384 |||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||| Sbjct 469 GCAATCTACGAAGAACACAAAGACGAAGACGGGTTTCTCTACATGACATACAGTGGAGAG 528 Query 385 AACACTTTTGG 395 ||||| ||||| Sbjct 529 AACACATTTGG 539 > AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932760-22934549 FORWARD LENGTH=720 Length=720 Score = 333 bits (180), Expect = 8e-91 Identities = 307/366 (84%), Gaps = 18/366 (5%) Strand=Plus/Plus Query 39 AATCGCCATGGCTAAGAGTTCCTTCAAGATCT-CTA-ACCCTCTCGAG-GCAAGA-ATGA 94 ||||||||||||||| || || |||||| | | | |||| || ||| | ||| | | Sbjct 58 AATCGCCATGGCTAATAGCTCTTTCAAG-T-TGGAACACCCACTAGAGAG-GAGACA-AA 113 Query 95 GTGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGATTGTGGAAAAG- 153 |||||||||||| ||||| |||||||| || ||||||||||| ||||| || | | || Sbjct 114 TTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAG-AGAGA 172 Query 154 GCTGGACA-AAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGCAGATCT 212 ||| || | |||||||||||| | || |||||||||||||| ||||| ||||| ||||| Sbjct 173 GCT-GAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT 231 Query 213 AACAGTTGGACAATTTGTATATGTGGTTCGCAAAAGAATCAAGCTTG-GAGCTGAGAAA- 270 ||| ||||| |||||||| ||||| || || ||||||||||||| || | || || ||| Sbjct 232 AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGC-TGAGTGCCGA-AAAG 289 Query 271 GCTATCTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTCTGCAATC 330 |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 290 GCTATCTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATC 349 Query 331 TATGAAGA-ACACAAAGATGAAGATGGGTTCCTCTACATGACTTACAGTGGAGAGAACAC 389 ||||| || | ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 350 TATGATGAGA-ACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACAC 408 Query 390 TTTTGG 395 ||||| Sbjct 409 CTTTGG 414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19604422110 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5