BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890129
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20370.1 | Symbols: TSF | PEBP (phosphatidylethanolamine-bin... 826 0.0
AT1G65480.1 | Symbols: FT | PEBP (phosphatidylethanolamine-bind... 473 6e-133
> AT4G20370.1 | Symbols: TSF | PEBP (phosphatidylethanolamine-binding
protein) family protein | chr4:11000771-11002996 REVERSE
LENGTH=799
Length=799
Score = 826 bits (447), Expect = 0.0
Identities = 501/528 (95%), Gaps = 0/528 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTTAAGTCGTAGAGATCCTCTTGTGGTGGGAAGTGTTGTTGGAGATGTTCTTGAT 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 32 ATGTCTTTAAGTCGTAGAGATCCTCTTGTGGTCGGCAGTGTTGTTGGAGATGTTCTTGAT 91
Query 61 CCTTTCACGAGATTGGTCTCTCTTCGGGTCACTTATGGCCAAAGAGAGGTTACTAATGGC 120
||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 92 CCTTTCACGAGGTTGGTCTCTCTTAAGGTCACTTATGGCCATAGAGAGGTTACTAATGGC 151
Query 121 TTGGATCTAAGGCCCTCTCAAGTTCTGAACAAACCAACAGTGGATATTGGAGGAGACGAC 180
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 152 TTGGATCTAAGGCCTTCTCAAGTTCTGAACAAACCAATAGTGGAGATTGGAGGAGACGAC 211
Query 181 TTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCT 271
Query 241 CACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATACCTGCCACAACTGGAACGGCC 300
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||
Sbjct 272 CACCAACGAGAATATCTCCACTGGTTGGTGACTGATATACCTGCCACCACTGGAAATGCC 331
Query 301 TTTGGCAATGAAGTGGTGTGCTACGAGAGTCCACGTCCACCCTCAGGAATTCACCGTATT 360
||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 332 TTTGGCAATGAGGTGGTGTGCTACGAGAGTCCACGTCCCCCCTCGGGAATTCATCGTATT 391
Query 361 GTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCGCCCGGGTGGCGCCAA 420
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 392 GTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCACCGGGGTGGCGCCAA 451
Query 421 CAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCTCCCTGTGGCTGCATCT 480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 452 CAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCTTCCTGTGGCTGCCTCT 511
Query 481 TTCTTCAATTGCCAGAGGGAGAATGGCTGTGGAGGAAGAATAACGTAG 528
| |||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 512 TACTTCAACTGCCAGAGGGAGAATGGCTGTGGGGGAAGAAGAACGTAG 559
> AT1G65480.1 | Symbols: FT | PEBP (phosphatidylethanolamine-binding
protein) family protein | chr1:24331428-24333934 FORWARD
LENGTH=855
Length=855
Score = 473 bits (256), Expect = 6e-133
Identities = 428/511 (84%), Gaps = 12/511 (2%)
Strand=Plus/Plus
Query 16 AGAGATCCTCTTGTGGTGGGAAGTGTTGTTGGAGATGTTCTTGATCC-TTTCACGAGATT 74
||||| |||||| | || | || ||||||||||| ||||||||||| ||| | ||||
Sbjct 98 AGAGACCCTCTTATAGTAAGCAGAGTTGTTGGAGACGTTCTTGATCCGTTT-AATAGATC 156
Query 75 GGTCTCTCTTCGGGTCACTTATGGCCAAAGAGAGGTTACTAATGGCTTGGATCTAAGGCC 134
|| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 157 AATCACTCTAAAGGTTACTTATGGCCAAAGAGAGGTGACTAATGGCTTGGATCTAAGGCC 216
Query 135 CTCTCAAGTTCTGAACAAACCAACAGTGGATATTGGAGGAGACGACTTCAGAAATTTCTA 194
||||| |||| ||||| |||| ||| || ||||| ||||| ||| |||| || |||||
Sbjct 217 TTCTCAGGTTCAAAACAAGCCAAGAGTTGAGATTGGTGGAGAAGACCTCAGGAACTTCTA 276
Query 195 CACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCTCACCTCCGAGAATA 254
|| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 277 TACTTTGGTTATGGTGGATCCAGATGTTCCAAGTCCTAGCAACCCTCACCTCCGAGAATA 336
Query 255 TCTCCATTGGTTGGTGACTGATATACCTGCCACAACTGGAACGGCCTTTGGCAATGA-AG 313
|||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
Sbjct 337 TCTCCATTGGTTGGTGACTGATATCCCTGCTACAACTGGAACAACCTTTGGCAATGAGAT 396
Query 314 TGGTGTGCTACGAGAGTCCACGTCCACCCT-CAGGAATTCACCGTATTGTGTTGGTATTG 372
|| |||| ||||| | |||| |||| | || |||||||||| ||| | ||||| |||||
Sbjct 397 TG-TGTGTTACGAAAATCCAAGTCC-CACTGCAGGAATTCATCGTGTCGTGTTTATATTG 454
Query 373 TTCCGGCAACTCGGAAGACAAACGGTTTATGCGCCCGGGTGGCGCCA-ACAGTTCAACAC 431
|| || || || || || ||||| || ||||| || ||||||||||| | | ||||||||
Sbjct 455 TTTCGACAGCTTGGCAGGCAAACAGTGTATGCACCAGGGTGGCGCCAGA-ACTTCAACAC 513
Query 432 TCGTGAGTTTGCTGAGATCTACAATCTTGGTCT-CCCTGTGGCTGCA-TCTTTCTTCAAT 489
||| ||||||||||||||||||||||| || || ||| ||||| ||| | ||||| ||||
Sbjct 514 TCGCGAGTTTGCTGAGATCTACAATCTCGGCCTTCCC-GTGGCCGCAGT-TTTCTACAAT 571
Query 490 TGCCAGAGGGAGAATGGCTGTGGAGGAAGAA 520
|| |||||||||| |||||| ||||||||||
Sbjct 572 TGTCAGAGGGAGAGTGGCTGCGGAGGAAGAA 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25267775941
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5