BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890580
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16530.1 | Symbols: | Family of unknown function (DUF577) |... 1153 0.0
AT2G03010.1 | Symbols: | Family of unknown function (DUF577) |... 183 2e-45
> AT4G16530.1 | Symbols: | Family of unknown function (DUF577)
| chr4:9311355-9315813 FORWARD LENGTH=2671
Length=2671
Score = 1153 bits (624), Expect = 0.0
Identities = 705/744 (95%), Gaps = 5/744 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGGTCACGGTGGTTTGAATATTCTTCCACAGAAGCGGTGGAATGTTTACAACTTC 60
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1654 ATGGGAGGTCACGGTGGTTTGAATATTCTTCCACAGAAGAGGTGGAACGTTTACAACTTC 1713
Query 61 GACAATCGAGAAAAAGTCCGAAAGGACGAAGAAGCTGCCGCTAGAGAAGAGCAGATCAAA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1714 GACAATCGAGAAAAAGTCCGAAAGGAGGAAGAAGCTGCCGCTAGAGAAGAGCAGATCAAA 1773
Query 121 CGCGAGGAAGCTAGAAAACGAGATGCTGAATCTCGTCTCGAAGTGCTTCGTAACGTCCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 CGCGAGGAAGCTAGAAAACGAGATGCTGAATCTCGTCTCGAAGTGCTTCGTAACGTCCGT 1833
Query 181 GGCTTGGCACCTCTGAAACGAGCTTCTCCGGAGGCAGAGAAGGGTAAGGATGAAGCAGTG 240
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1834 GGCTTGGCGCCTCTCAAACGAGCGTCTCCGGAGGCAGAGAAGGGTAAGGATGAAGC-G-G 1891
Query 241 GTGGTGGCGGCGGCTGTTGTTAAATCCACTGCTGTTGTTGTGGAGAGTGTTGAACCGGAG 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1892 -TGGTGGCGGCGGCTGTTGTTAAATCGACTGCTGTTGTTGTGGAGAGTGTTGAATCGGAG 1950
Query 301 GAGCCTAAGACGGGTCATATAAATCTATTTGAAGGGATTAGGATATTTGATCCGATTGAG 360
|||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||
Sbjct 1951 GAGCCTAAGACGGGTCATATTAATCTGTTCGAAGGGATTAGGATTTTTGATCCGATTGAG 2010
Query 361 ATTCC-GAAGAATGATAAGCCTGCGGAGGAGGAAGATCAGAGAAGGAAGAAGATGAGGAA 419
|| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2011 AT-CAAGAAGAATGATAAGCCTGCGGATGAGGAAGATCAGAGAAGGAAGAAGATGAGGAA 2069
Query 420 AGAAGCTGCTGCAACGGCGAGAGCTTCTGCGAAAGATGCTGCAGCGAGAGCTGGTGATCC 479
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2070 AGAAGCGGCTGCAACGGCGAGAGCCTCTGCGAAAGATGCTGCTGCGAGAGCTGGTGATCC 2129
Query 480 TGATGAGGAGAAGTATAGATTGGGATATGGGGTTGCTGGTAAAGGTGTGAAGCGTCCTTG 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2130 TGATGAGGAGAAGTATAGATTGGGATATGGAGTTGCTGGTAAAGGTGTGAAGCGTCCTTG 2189
Query 540 GTATCTTGAGAAACGGAACGGTGATGATGATTGTGTTCGTGGTGAGGATGATGATGGTGG 599
||| ||||||||||| |||| ||| ||||| ||||||| ||||||||||||||||||||
Sbjct 2190 GTACCTTGAGAAACGTAACGATGAAAATGATAGTGTTCGAGGTGAGGATGATGATGGTGG 2249
Query 600 ATATAGAGGTGACgaagctaagaagaagaagatgagtgggaagaagagcttgaaggagtt 659
|| | | ||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2250 ATGTGGTGGTTATGAAGCTAAGAAGAAGAAGATGAGTGGGAAGAAGAGCTTAAAGGAGTT 2309
Query 660 gagagaagaaaggttgaagagggagagggttgagaaggaaagagagagagctcttttcat 719
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2310 GAGGGAAGAAAGGTTGAAGAGGGAGAGGGTTGAGAAGGAAAGAGAGAGAGCCCTTTTCAT 2369
Query 720 gaaacagagccagagagaCGGTGG 743
||||||||||||||||| ||||||
Sbjct 2370 GAAACAGAGCCAGAGAGCCGGTGG 2393
> AT2G03010.1 | Symbols: | Family of unknown function (DUF577)
| chr2:879247-881471 FORWARD LENGTH=1107
Length=1107
Score = 183 bits (99), Expect = 2e-45
Identities = 113/120 (94%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 75 AGTCCGAAAGGACGAAGAAGCTGCCGCTAGAGAAGAGCAGATCAAACGCGAGGAAGCTAG 134
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 765 AGTCCGAAAGGATGAAGAAGCTGCGGCTAGAGAAGAGCAGATCAAACGCGAGGACGCTAG 824
Query 135 AAAACGAGATGCTGAATCTCGTCTCGAAGTGCTTCGTAACGTCCGTGGCTTGGCACCTCT 194
|||| ||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 825 AAAAAGAGATGCTGAATCTCGTCTCGAAGTGCTTCGTAACGTCCGTGGTTTAGCCCCTCT 884
Score = 84.2 bits (45), Expect = 2e-15
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 565 GATGATTGTGTTCGTGGTGAGGATGATGATGGTGGATATAGAGGTGACgaagct 618
|||||| ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 6 GATGATAGTGTTCGCGGTGAGGATGATGATGGTGGATATAGAGGTGATGAAGCT 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5