BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890648

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16140.1 | Symbols:  | proline-rich family protein | chr4:91...   706    0.0  


> AT4G16140.1 | Symbols:  | proline-rich family protein | chr4:9129016-9129841 
FORWARD LENGTH=826
Length=826

 Score =  706 bits (382),  Expect = 0.0
 Identities = 468/507 (92%), Gaps = 15/507 (3%)
 Strand=Plus/Plus

Query  1    ATGGAAACTTTCAGAACATTCCAtctttttcttttacttctcttcttcttcttcttcACA  60
            |||||||||||||||||||||||      || |||  |||||||||||||||||||||||
Sbjct  31   ATGGAAACTTTCAGAACATTCCA------TC-TTT--TTCTCTTCTTCTTCTTCTTCACA  81

Query  61   TTCACTACTTCACTGACGTCACCATCTCAGATCGCTGACTGTACAATGTGCACTTCTTGT  120
            ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  82   TTCACTACTACCCTGACGTCACCATCTCAGATCGCAGACTGTACAATGTGCACTTCTTGT  141

Query  121  GACAACCCTTGTCAACCAAACCC-T-T-CTCCTCCACCGCCGTCAAATCCATCTCCTCCT  177
            ||||||||||||||||||||||| | | ||||||| || |||||||||||||||||||||
Sbjct  142  GACAACCCTTGTCAACCAAACCCTTCTCCTCCTCCTCCACCGTCAAATCCATCTCCTCCT  201

Query  178  CCTCCAGCCCCCACCACCACCGCATGTCCTCCACCTCCTAGCTCCGGTGGTGGTGGTCCT  237
            |||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct  202  CCTCCATCTCCCACCACCACCGCCTGTCCTCCACCTCCTAGCTCCAGTGGTGGTGGTCCT  261

Query  238  TACTACTACTACCCTCCTCCTTCTCAATCTGGCTCCTACCGTCCACCACCTTCTTCCTCC  297
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct  262  TACTACTACTACCCTCCTGCTTCTCAATCTGGCTCTTACCGTCCACCACCTTCTTCCTCC  321

Query  298  GGCGGTGGCTACTATTATCCACCTCCTAAAAGTGGAGGAAACTACCCTTTTACGCCGCCG  357
             | ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| 
Sbjct  322  AGTGGTGGCTACTACTATCCACCTCCTAAAAGTGGAGGAAACTACCCTTATACACCGCCT  381

Query  358  CCAAACCCCATCGTTCCATATTTTCCGTTTTACTACTACAACCCTCCGCCTCAATCTGTT  417
            |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  382  CCAAACCCTATCGTTCCATATTTTCCGTTTTACTATTACAACCCTCCGCCGCAATCTGTT  441

Query  418  ATGTCCGGATCCGATGCAAAGATCAGATTCTCTTACGGAGTTTCATTTCTTCTTTTAGTT  477
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||  | ||
Sbjct  442  ATGTCCGGATCCGATGCAAAGATCAGATTCTCTTACGGAGTTTCATTTATT-TTA-A-TT  498

Query  478  TTCTCTCTTTGTTTCGGTTGCTTTTAG  504
            |||||||||| |||||||||||| |||
Sbjct  499  TTCTCTCTTTATTTCGGTTGCTTCTAG  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5