BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890655
Length=3378
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16830.1 | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731534-... 3657 0.0
> AT3G16830.1 | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731534-5737772
FORWARD LENGTH=3812
Length=3812
Score = 3657 bits (1980), Expect = 0.0
Identities = 2960/3429 (86%), Gaps = 84/3429 (2%)
Strand=Plus/Plus
Query 1 ATGTCATCTCTAAGCAGAGAGTTAGTTTTCTTAATTCTCCAGTTCTTAGATGAAGAAAAG 60
||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 176 ATGTCGTCTTTGAGCAGAGAGTTAGTTTTCTTAATTCTCCAGTTCTTAGATGAGGAGAAG 235
Query 61 TTCAAAGAATCTGTTCACAAGCTTGAGCAAGAATCGGGATACTT-TTTCAA-TTTGAAGT 118
||||| ||||||||||||||||| ||||||||||| || | ||| ||| || || ||||
Sbjct 236 TTCAAGGAATCTGTTCACAAGCTAGAGCAAGAATCTGGCTTCTTCTTT-AACATT-AAGT 293
Query 119 ACTTTGAAGAGAAGGCT-TTGCTTGGGGAGTGGGACGAAGTGGAGAAGTATCTTTCTGGT 177
||||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 294 ACTTTGAAGAGAAAGCTCTTGC-TGGAGAGTGGGATGAAGTGGAGAAGTATCTTTCTGGT 352
Query 178 TTCACTAAGGTTGATGATAATCGTTACTCGATGAAAATCTTCTTCGAGATCAGGAAGCAA 237
|||||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 353 TTCACTAAAGTCGATGATAATCGTTACTCTATGAAAATCTTCTTTGAGATTAGGAAGCAA 412
Query 238 AAGTATCTCGAAGCACTAGATCGAAATGATAGGGCAAAAGCTGTTGAGATATTAG-CAAA 296
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 413 AAGTATCTCGAAGCTCTAGATCGAAATGACAGAGCAAAAGCTGTTGAGATATTAGCCAAA 472
Query 297 GGACTTGAAAGTTTTTGCAACATTCAACGAGGAGCTTTACAAGGAAATCACTCAGCTTCT 356
|||||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||
Sbjct 473 -GACTTGAAAGTTTTCGCTACATTTAACGAGGAGCTTTACAAGGAGATTACTCAGCTGCT 531
Query 357 TACTCTGGAGAATTTTAGGGAAAATGACCAGTTATCGAAATATGGTGATACCAAATCAGC 416
||||||||||||||||||||||||||| || | ||||||||||||||||| ||||| ||
Sbjct 532 TACTCTGGAGAATTTTAGGGAAAATGAGCAACTGTCGAAATATGGTGATACTAAATCTGC 591
Query 417 TAGGGGTATTATGCT-TGGGGAGTTG-AGAAAATTGATTGAGGCAAATCCTCTGTTTAGA 474
||| ||| ||| | | |||||| || |||||||||||||| |||||||||||| ||
Sbjct 592 AAGGTCTATAATG-TATACTGAGTTGAAG-AAATTGATTGAGGCGAATCCTCTGTTTCGA 649
Query 475 GAGAAGCTTGCTTTACCCACTTTCAAGGCTTCACGCCTGCGAACCTTGATCAATCAAAGC 534
|||||||| || || |||| |||||| ||||| ||||||||||| |||||||||||||||
Sbjct 650 GAGAAGCTAGCCTTCCCCAGTTTCAAAGCTTCTCGCCTGCGAACTTTGATCAATCAAAGC 709
Query 535 TTGAATTGGCAACATCAGCTATGTAAAAACCCAAGGCCTAATCCAGACATCAAAACATTG 594
|| || ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 710 TTAAACTGGCAGCATCAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTG 769
Query 595 TTCACT-GATCACACTTGTTCACCA-CAAAATGGAGCTCGTGCACCCACTCCTGT---TC 649
||| | |||||| |||| |||||| | ||| || |||||||||| ||||||||| ||
Sbjct 770 TTC-TTGGATCACTCTTGCTCACCATC-AAACGGTGCTCGTGCACTCACTCCTGTCAATC 827
Query 650 TTCCAGTTGGTGCTGTTGCAAAG-CCTTC-AACATATGCTCCTCTTGGGGTACATGGTGG 707
||||||||| ||||||||| ||| ||||| ||| | || ||||||||| || ||||||||
Sbjct 828 TTCCAGTTGCTGCTGTTGC-AAGACCTTCAAAC-TTTGTTCCTCTTGGAGTGCATGGTGG 885
Query 708 ACCTTTTCAGCCTACTTCTGCTCCGGCTCCTAACGCAAATGCTTTAGCTGGATGGATGGC 767
||| ||||| ||| | |||||||||||||||| || |||||||||||||||||||||||
Sbjct 886 ACCCTTTCAATCTAATCCTGCTCCGGCTCCTAATGCCAATGCTTTAGCTGGATGGATGGC 945
Query 768 AAACCCAAATCCATCTTCATCAGTTCC-TGGTGGTGTTGTGGCCT-CTTCCCCATTTCCT 825
|||||||||||| |||||||||||||| | ||||||||| | || ||||||||||||||
Sbjct 946 AAACCCAAATCCTTCTTCATCAGTTCCAT-CTGGTGTTGTCG-CTGCTTCCCCATTTCCT 1003
Query 826 ATGCAGCCAAATCAAGTTGCCAT--GCTAAAACACCCTCGGCCACCCTCAAACTCCCTTG 883
|||||||||| ||||||| || ||| |||||||||||| |||| || ||||| || |
Sbjct 1004 ATGCAGCCAAGTCAAGTT--AATGAGCTGAAACACCCTCGGGCACCGTCTAACTCTCTAG 1061
Query 884 GAATGATGGATTATCAAAGTGCTGATCATGAGCAACTTATGAAACGTTTACGGTCTGGAC 943
|| | ||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||
Sbjct 1062 GATTAATGGATTATCAAAGTGCTGATCACGAGCAACTCATGAAACGCTTACGGTCTGCAC 1121
Query 944 CAAC-TGGTGATGAGGTCACATATCCTGCTCATTCTCAGCCTACC-GCCTCACTTGATGA 1001
||| | | |||||||||||||||||||||||||| || || || |||||||||||
Sbjct 1122 AAACAT-CCAACGAGGTCACATATCCTGCTCATTCTCATCC-CCCTGCGTCACTTGATGA 1179
Query 1002 CCTCCCTCGAAATGTAGTGAGTACAATGCGCCAAGGGTCAGCGGTGACAAGCATGGATTT 1061
||||||| ||||||||||||||||||| ||||||||||| | ||||| ||||||||||||
Sbjct 1180 CCTCCCTAGAAATGTAGTGAGTACAATTCGCCAAGGGTCGGTGGTGATAAGCATGGATTT 1239
Query 1062 TCACCCTTCCCATCACACGCTGCTCACTGTTGGTTGTTCCAGCGGCGAATTCACCTTGTG 1121
||||||||| |||||||| ||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 1240 TCACCCTTCTCATCACACTTTGCTCGCTGTTGGTTGTTCAAGCGGCGAAGTCACCTTGTG 1299
Query 1122 GGAAGTTGGATCTAGAGAGAAGCTTTTCACAGAGCCTTTCAAGATATGGAATATGGCATC 1181
|||||||||||| ||||| ||| || ||||||| ||||||||||||||||||||||| |
Sbjct 1300 GGAAGTTGGATCCAGAGAAAAGGTTGTCACAGAACCTTTCAAGATATGGAATATGGCGGC 1359
Query 1182 TTGTTCTGTGATCTTCCAGGGTTCTATTGTCAAGGACCCATCAG-TATCTGTCAGTCGTG 1240
||||||||||||||||||||||||||| ||||| || ||||| | |||| |||| |||||
Sbjct 1360 TTGTTCTGTGATCTTCCAGGGTTCTATAGTCAAAGAGCCATC-GATATCCGTCACTCGTG 1418
Query 1241 TATCATGGAGTCCAGATGGAAA-TTTCATTGGGGTTGCGTTTT-CTAAACATCTGATCCA 1298
|| ||||||| ||||||||||| || | |||||||| | |||| ||||||||||||||||
Sbjct 1419 TAGCATGGAGCCCAGATGGAAACTTGC-TTGGGGTTTC-TTTTACTAAACATCTGATCCA 1476
Query 1299 TATATATTCTTACCAAGGGTCTGAACTACGTCAACACCTAGAGATGGATGCACATGTTGG 1358
| ||||| |||||||||| || || |||||||||||||| ||||| ||||| ||||| ||
Sbjct 1477 TGTATATGCTTACCAAGGCTCAGACCTACGTCAACACCTCGAGATTGATGCTCATGTAGG 1536
Query 1359 CTGTGTGCATGACTTGGCCTTCGCCCACCCAAATAAGCAACTTTGTATTGTGACTTGTGG 1418
||||||| |||||||||| ||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1537 CTGTGTGAATGACTTGGCGTTCGCCCACCCAAATAAGCAAATGTGTGTTGTGACTTGTGG 1596
Query 1419 GGAAGATAAATTGATAAAGGTCTGGGATTTGAGTGGGAAGAAACT-TTATACCTTTGAAG 1477
||| || |||||||| ||||| |||||||||||||||||||| || || ||||||||||
Sbjct 1597 GGATGACAAATTGATTAAGGTGTGGGATTTGAGTGGGAAGAAGCTCTT-CACCTTTGAAG 1655
Query 1478 GGCACGAGGCTCCAGTTTACTCCATCTGCCCTCACCAGAAAGAAAATATCCAGTTTATAT 1537
|||||||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||
Sbjct 1656 GGCACGAGGCACCAGTTTATTCCATTTGCCCTCACCAGAAGGAAAATATTCAGTTTATAT 1715
Query 1538 TCTCAACTGCTCTTGATGGTAAGATCAAGGCTTGGCTCTATGATAATGTGGGTTCTAGAG 1597
||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| | |
Sbjct 1716 TCTCAACCGCTCTTGATGGAAAGATCAAGGCGTGGCTCTATGATAATGTTGGTTCTCGGG 1775
Query 1598 TTGACTATGATGCACCAGGACAGTGGTGTACAACTATGCTATATAGTGCTGATGGTAGCA 1657
|||| ||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 1776 TTGATTATGACGCACCGGGACAGTGGTGTACAACAATGCTCTACAGTGCTGATGGAAGCA 1835
Query 1658 GATTATTTTCTTGTGGAACAAGTAAAGAGGGAGATTCTTTCCTGGTTGAGTGGAATGAGA 1717
|| ||||||||||||| || |||||||| ||||| |||||||| || |||||||||||||
Sbjct 1836 GACTATTTTCTTGTGGGACGAGTAAAGAAGGAGACTCTTTCCTCGTCGAGTGGAATGAGA 1895
Query 1718 GTGAAGGTGCCATAAAGAGGACATATTTGGGCTTTAGAAAGAAATCTA-CAGG-GTCGGT 1775
||||||||||| |||||||||||||||| |||||||| |||||||| | | || || ||
Sbjct 1896 GTGAAGGTGCCCTAAAGAGGACATATTTAGGCTTTAGGAAGAAATC-AGCTGGAGT-TGT 1953
Query 1776 TCAGTTTGATACAACACGAAACCGATTCATGGCTGTTGGTGAAGATAACCAAGTAAAATT 1835
||||||||||||||| || ||||| ||| |||||||||||||||| || ||| |||||||
Sbjct 1954 TCAGTTTGATACAACCCGTAACCGTTTCTTGGCTGTTGGTGAAGACAATCAAATAAAATT 2013
Query 1836 CTGGGATATGGACAATACTAATATCTTAACAACTGTGGAGGCTGATGGAGGACTCCCGAG 1895
|||| | ||||||||||| ||| | || ||| ||| |||||||| || ||||| ||||
Sbjct 2014 CTGGAACATGGACAATACAAATCTTTTGACAGTTGTTGAGGCTGAAGGTGGACTTCCGAA 2073
Query 1896 CCTTCCCCGATTGAGATTCAACAAGGAAGGAAACCTTCTTGCTGTTAGTACAGCTGATAA 1955
|| ||||||||||||||||||||||| || || |||||||| |||| |||||| |||||
Sbjct 2074 TCTACCCCGATTGAGATTCAACAAGGATGGGAATCTTCTTGCAGTTACTACAGCAGATAA 2133
Query 1956 CGGATTCAAAATCCTTGCTAATGGGGATGGTCTGAGAACCTTAAGGGTCA-TGGAAGCTC 2014
|||||||| |||||||| ||| |||||||| ||||||||||| | || | ||||| |
Sbjct 2134 TGGATTCAAGATCCTTGCAAATACTGATGGTCTCAGAACCTTAAGAG-CATTTGAAGCGC 2192
Query 2015 GTTCTTTCGAAGCATCCAGAGCATCGACAGATATGAAGGTATCCTCGTCTGCAATGG-TT 2073
| ||||| |||||||| | |||||| | ||||||||||||||| | || ||||||| ||
Sbjct 2193 GGTCTTTTGAAGCATCTAAAGCATCCATTGATATGAAGGTATCCACCTCCGCAATGGCTT 2252
Query 2074 ACAAACATTGGCCCATCTATTGGTAAAATGGAACAAATGGATATTGGCTCTCCTGCAAGG 2133
||| ||| |||| ||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 2253 -CAAGCATCAGCCCCGCTATTGGTAAAATTGAACACATGGACGCAGGCTCTCCTGCAAGG 2311
Query 2134 CCAACCCCTATTCCTAACGGAGTTGATGCAATGTCAAGAACTATGGAGAATCCAAGAAAC 2193
|||||||| |||||||| ||| |||| |||||||||||||||||||| || |||||||||
Sbjct 2312 CCAACCCCAATTCCTAATGGAATTGAGGCAATGTCAAGAACTATGGAAAAGCCAAGAAAC 2371
Query 2194 GTGGAGTCTGTTGAAAAGTCCAAACCTTCGGAGCTCATGGAAATTGTTGATCCTG-CTCA 2252
|||| |||||||| ||||| ||||||| ||||||| |||||||||||||| | ||||
Sbjct 2372 TTGGACTCTGTTGATAAGTCTAAACCTTTAGAGCTCACAGAAATTGTTGATCC-GACTCA 2430
Query 2253 GTGCCGACAAGTGACCATGCCAGATAGCAAGGATTCGGTTAGCAAGGTTGCTCGGCTTCT 2312
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2431 GTGCCGACAAGTGACAATGCCAGATAGCAAGGACTCTGTTAGCAAGGTTGCTCGGCTTCT 2490
Query 2313 TTATACAAATTCGGGTGTTGGCATTTTGGCTCTTGGAACAAATGGTGTCCAGAGACTATG 2372
||| |||||||| || ||||| |||||||||||||| |||||||||| || ||||||||
Sbjct 2491 TTACACAAATTCTGGCGTTGGTGTTTTGGCTCTTGGATCAAATGGTGTTCAAAGACTATG 2550
Query 2373 GAAGTGGAGT-CGCAGCGAGCAAAATCCAACTGGGAAGGCTACCGCTAGTGTCACTCCAC 2431
|||||||| | |||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 2551 GAAGTGGA-TCCGCAATGAGCAAAATCCAACTGGGAAGGCAACTGCTAGTGTAACTCCAC 2609
Query 2432 AGCATTGGCAGCCTAACAGTGGTCTCTTAATGACAAATGATGTTCCGGAGAATCCTG-AG 2490
||||||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||| ||
Sbjct 2610 AGCATTGGCAGCCAAACAGCGGTCTCCTAATGGCAAATGATGTTCCCGAGAATCCTGAAG 2669
Query 2491 GGAACTGTGCCGTGCATAGCCCTTTCTAAGAATGACTCGTATGTAATGTCTGCTTGTGGT 2550
|| | ||| ||||| ||||| ||||| ||||||||||| || |||||||| |||||||||
Sbjct 2670 GG-AGTGTTCCGTGTATAGCACTTTCCAAGAATGACTCATACGTAATGTCAGCTTGTGGT 2728
Query 2551 GGAAAGGTTTCACTGTTTAATATGATGACATTT-AAGGTAATGACTACTTTCATGCCACC 2609
||||||||||| | || ||||||||||| ||| || |||||||| ||||||||||||||
Sbjct 2729 GGAAAGGTTTCGTTATTCAATATGATGAC-TTTCAAAGTAATGACAACTTTCATGCCACC 2787
Query 2610 TCCTCCTGCTTCGACGTTCCTGGCATTTCATCCTCAAGATAATAACATCATTGCAATTGG 2669
|| || ||||| || ||| ||||||||||||||||||||||||| || |||||||| ||
Sbjct 2788 GCCACCAGCTTCAACTTTCTTGGCATTTCATCCTCAAGATAATAATATTATTGCAATCGG 2847
Query 2670 GATGGAGGATTCAACTATTCATATTTACAACGTCAGGGTAGATGAGGTGAAAACAAAGTT 2729
||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2848 GATGGAGGACTCGAGTATACATATTTACAACGTCAGGGTAGATGAGGTGAAAACAAAGTT 2907
Query 2730 GAAAGGCCACCAAAAGCACATCACTGG-CTTAGCATTCTCTGCCACTCTCAATATTCTGG 2788
|||||| ||||| |||||||| ||||| || |||||||||| || | ||||||||||| |
Sbjct 2908 GAAAGGTCACCAGAAGCACATAACTGGTCT-AGCATTCTCTACCGCGCTCAATATTCTTG 2966
Query 2789 TCTCCTCTGGTGCTGATGCCCAGCTCTTCTTTTGGAGTGCTGACTCATGGGAGAAGAAGA 2848
|||| |||||||| ||||| ||||||||||| |||| |||||||| |||||||| ||||
Sbjct 2967 TCTCTTCTGGTGCCGATGCTCAGCTCTTCTTCTGGACCGCTGACTCGTGGGAGAAAAAGA 3026
Query 2849 AATCTTCAGCTATCCAACTACCAGCTGG-AAAGTCACCAGTAGGCGACACTCGTGTCCAG 2907
|||||||||| || || |||||| |||| |||| |||||||||||||||| || |||||
Sbjct 3027 AATCTTCAGCGATACAGCTACCACCTGGCAAAG-CACCAGTAGGCGACACACGAGTCCAA 3085
Query 2908 TTCCACAACGACCAGGTCCATTTACTGGTTTCTCATGAGACACAGATAGCCATATATGAC 2967
|||||||||||||| |||| ||| ||||||| |||||||||||| | ||||| || ||
Sbjct 3086 TTCCACAACGACCAAATCCAGTTATTGGTTTCACATGAGACACAGCTCGCCATTTACGAT 3145
Query 2968 GGTTCAAAGATGGAGTGCATTCAGAAGTGGGTGCCACAAGAATCGCTATCATCACCCATA 3027
| ||| |||||||| |||||||| ||||||||||| |||||| | || || || ||||||
Sbjct 3146 GCTTCGAAGATGGAATGCATTCATAAGTGGGTGCCCCAAGAAGCTCTCTCTTCGCCCATA 3205
Query 3028 ACCTGC-GCATCTTACTCCTGCAACAGTCATCTGGTTTACGCATCATTTGCAGATGGAAG 3086
|||| | ||||||||||| |||||||| || ||||||||||| ||||| || |||||||
Sbjct 3206 ACCT-CTGCATCTTACTCATGCAACAGCCAACTGGTTTACGCGTCATTCGCTGATGGAAA 3264
Query 3087 CATCGGAGTCTTCGATGCTGAATACTTGAGACTCAGATGTCGCATTGGCCCATCAGCCTA 3146
||| | |||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 3265 CATTGCAGTCTTTGATGCTGAATCCTTGAGACTCAGATGCCGCATTGCCCCATCAGCCTA 3324
Query 3147 CATGCCCCAACCCACACCAAACAGTGCTCCAATCATGCCACTGGTAATTACTGCTCATCC 3206
|||||| ||||| |||||||||||||| || || | |||| ||| || || ||||||||
Sbjct 3325 CATGCCTCAACCTACACCAAACAGTGCACCGATTTTCCCACAGGTGATCACAGCTCATCC 3384
Query 3207 TCAAGAACCGAACCAAATAGCTGTTGGACTCTCTGATGGATCGGTTAAAGTTCTTGAAAC 3266
||||||||||| ||| |||| |||||||| |||||||| ||||||||||| |||| |
Sbjct 3385 ACAAGAACCGAATCAATTAGCGGTTGGACTGTCTGATGGTTCGGTTAAAGTGATTGAG-C 3443
Query 3267 CC-CGGAACCTTT-TAGAAGATGGGGTGTTG---T-G--G-------AGA-AA-GCAGGG 3309
| | |||| ||| ||||||||||||||||| | | | ||| || ||||||
Sbjct 3444 CATCAGAAC-TTTCTAGAAGATGGGGTGTTGGCGTCGCAGCTGGTTCAGATAAAGCAGGG 3502
Query 3310 ACTGAAAACGGACGGCCTTCTAGTGCGTCGGTGGCTAATAACTCTGGCTCAGATCAGATT 3369
|||||||| |||||||| |||||| | || | |||||| ||||| | || |||||||||
Sbjct 3503 ACTGAAAATGGACGGCCGTCTAGTTCATCAGCGGCTAACAACTCAAGTTCGGATCAGATT 3562
Query 3370 CAAAGGTAA 3378
|||||||||
Sbjct 3563 CAAAGGTAA 3571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168109425993
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5