BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890815
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14965.1 | Symbols: AtMAPR4, MAPR4 | membrane-associated pro... 1147 0.0
> AT4G14965.1 | Symbols: AtMAPR4, MAPR4 | membrane-associated progesterone
binding protein 4 | chr4:8551244-8553554 FORWARD
LENGTH=1036
Length=1036
Score = 1147 bits (621), Expect = 0.0
Identities = 700/739 (95%), Gaps = 2/739 (0%)
Strand=Plus/Plus
Query 1 ATGATTCCGGCGAGGAGTTTTCTGTTATCTCCGTTCGTTGGCGTCACGTTGATCGCCGTT 60
||||||||||||||||| ||||| |||||||| || || ||||||||||| |||| ||||
Sbjct 113 ATGATTCCGGCGAGGAGGTTTCTCTTATCTCCATTTGTCGGCGTCACGTTTATCGTCGTT 172
Query 61 CTCGTCGCTTTCTACTTCAGAACTTCCCTCAAGTCTCCACAACACCAAAT-TCAAAAGAG 119
|||||| || ||||||||||| ||||| |||||||||||||||||| ||| |||||||||
Sbjct 173 CTCGTCTCTCTCTACTTCAGATCTTCCTTCAAGTCTCCACAACACC-AATATCAAAAGAG 231
Query 120 GTTGTTCTCTGCTGAAGAATTGGCTTTGTACAATGGCACTGATGCAACATTACCTATACT 179
||| || ||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||
Sbjct 232 GTTATTTTCTGCTGAAGAATTGGCATTGTATAATGGTACTGATGAAACATTACCTATACT 291
Query 180 CTTAGGGATTCTTGGATCTGTGTTTGATGTGACGAAAGGAAAATCTCATTACGGTAGTGG 239
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 292 CTTAGGGATTCTTGGATCTGTGTTCGATGTGACGAAAGGAAAATTTCATTACGGTAGTGG 351
Query 240 AGGAGGTTACAATCATTTTGCTGGAAGAGACGCTTCTCGTGCATTTGTTTCTGGGAACTT 299
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 352 AGGAGGGTACAACCATTTTGCTGGAAGAGACGCTTCTCGTGCATTTGTTTCTGGCAACTT 411
Query 300 TACAGGAGATGGACTTACAGATTCGTTACAAGGGTTATCTAGCAGTGAGGTGAAGAGCAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TACAGGAGATGGACTTACAGATTCGTTACAAGGGTTATCTAGCAGTGAGGTGAAGAGCAT 471
Query 360 TGTTGACTGGCGAGGTTTCTACTCCAGGACCTACACTCCTGTTGGGAAGCTTGTTGGGCG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGTTGACTGGCGAGGTTTCTACTCCAGGACCTACACTCCTGTTGGGAAGCTTGTTGGGCG 531
Query 420 GTTCTACGATAGCCAAGGGAATCCAACTAAACACCTGAAAGGAGCTGAAGCAAAAGCCTC 479
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 532 GTACTACGATAGCCAAGGGAATCCAACTAAACACCTTAAAGGAGCTGAAGCAAAAGCCTC 591
Query 480 CAGAGGTGCACAACTCATGGAGAAACAGAAGACTGAGGAAGCCAAGCTACCGAGTTGCAA 539
|||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||
Sbjct 592 CAGAGGTGCACAACTCATGGAGAAACAGAAGACTGAAGAAGCCAAGCAATCGAATTGCAA 651
Query 540 CTCACGATGGAGTCAAGATGAAGGTGGAGAGGTTTGGTGTGATGTTGGAGTACCAAGACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 652 CTCACGATGGAGTCAAGATGAAGGTGGAGAGGTTTGGTGTGATGTTGGAGTGCCAAGACT 711
Query 600 GGTACAGAGACCTTTGGAGATAGCAATAACAGGTTCAATGAGCAAACGTTGCGCTTGCTT 659
|||||| ||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct 712 GGTACAAAGACCTTTGGAGATAGCAATAACTGGCTCGATGAGCAAACGCTGTGCTTGCTT 771
Query 660 TGAGGAAGACCAACTTGATCAGTCTGGCTTGGAGATCTATAAAGACTGTGAGCCTCATGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 772 TGAGGAAGACCAACTTGATCAGTCTGGCTTGGAGATCTATAAAGACTGTGAACCTCTTGC 831
Query 720 CAAGACTTGCAGGGTTTGA 738
|||||||||||||||||||
Sbjct 832 CAAGACTTGCAGGGTTTGA 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5