BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890839 Length=1710 Score E Sequences producing significant alignments: (Bits) Value AT4G14790.1 | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helica... 2750 0.0 > AT4G14790.1 | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helicase, mitochondrial (SUV3) | chr4:8496031-8500152 REVERSE LENGTH=2359 Length=2359 Score = 2750 bits (1489), Expect = 0.0 Identities = 1637/1710 (96%), Gaps = 4/1710 (0%) Strand=Plus/Plus Query 1 ATGGCGTATTCTGTTCTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 ATGGCGTATTCTGTTGTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 383 Query 61 CAAGCTGATCAGGGAAGTTTGTGGCGGTTTTACTCCGAACCTGAGTTTGGTGAGTTTTTG 120 ||||||||| | |||||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct 384 CAAGCTGATAAAGGAAGTTTGTGGCGGTTTCACTTTGAACCTGAGTTTGGTGACCTTTTG 443 Query 121 AGATTAGGTGTCTTGACTAGGAACTACAGAAAGAACTCAGGATCTCCAAAGTTTGATTTC 180 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 444 AGATTAGGTGTCTTGACTAGGAATTATAGAAAGAACTCTGGATCTCCAAAGTTTGATTTC 503 Query 181 ACTGGCACGGGAACTACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 240 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 ACTGGCACTGGAACCACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 563 Query 241 TATCCAATAGCTCGGAAGAAGAAGCGTAAGGTTATTCTACATGTTGGCCCGACAAACAGT 300 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 564 TATCCTATAGCTCGGAAGAAGAAGCGTAAGGTCATTCTACATGTTGGCCCGACAAACAGC 623 Query 301 GGGAAGACATATAGTGCTCTTAAGCACCTTGAGCAGAGTTCTTCAGGCGTATATTGTGGT 360 ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| Sbjct 624 GGGAAGACATATAGTGCCCTTAAGCACCTTGAACAGAGTTCTTCAGGTGTATATTGTGGT 683 Query 361 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 743 Query 421 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 744 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 803 Query 481 GTTGAAATGGCTGATGTTACGTCGGTCTATGATTGTGCCATCATTGACGAAATTCAGATG 540 |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 804 GTTGAAATGGCTGATGTTACATCTGTCTACGATTGTGCCATCATTGACGAAATTCAGATG 863 Query 541 GTGGGATGTACACAAAGGGGATTTGCATTTACTCGTGCTCTACTTGGAATCGCGGCTGAT 600 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 864 GTGGGATGTAAACAAAGGGGATTTGCATTTACTCGTGCTTTACTTGGAATCGCGGCTGAT 923 Query 601 GAGCTACATCTATGTGGCGATCCTGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 660 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 924 GAGCTACATTTATGTGGCGATCCAGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 983 Query 661 ACTGGAGATGATGTCGAGGTTCGA-ACATATGAGAGGCTTTCACCATTAGTCCCTTTGAA 719 |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 984 ACTGGAGATGATGTCGAGGTTC-ATACCTATGAGAGGCTTTCACCATTAGTCCCTTTGAA 1042 Query 720 GGTGCCTGTTTCATCAGTTTCCAGTATCAAAACTGGGGATTGTCTTGTCACCTTTTCCCG 779 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1043 GGTTCCTGTTTCATCAGTTTCCAGTATTAAAACTGGGGATTGTCTTGTCACTTTTTCCCG 1102 Query 780 AAAAGATATATATGCATATAAGAAAATAATTGAACGTGCGGGGAATCATCTTTGCTCTGT 839 ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1103 AAAAGATATATATGCGTATAAGAAAACAATTGAACGTGCGGGGAAGCATCTTTGCTCTGT 1162 Query 840 GGTTTATGGTTCATTGCCTCCAGAGACTCGGACAGCACAGGCAACAAGGTTTAATGACGA 899 |||||||||||| ||||||||||||||||| || |||||||||||||||||||| || || Sbjct 1163 GGTTTATGGTTCGTTGCCTCCAGAGACTCGCACGGCACAGGCAACAAGGTTTAACGATGA 1222 Query 900 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCAATTGGCATGGGTCTTAATTTGAA 959 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1223 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCGATTGGCATGGGTCTTAATTTGAA 1282 Query 960 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATTTGATGGTTCCGAGACCAGAGACCT 1019 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1283 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATATGATGGTTCCGAGACCAGAGACCT 1342 Query 1020 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGATTCCGATCAAAGTTCCC 1079 |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 1343 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGGTTTCAATCAAAGTTCCC 1402 Query 1080 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTCCACTCTTCTCTCAA 1139 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1403 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTTCACTCTTCTCTCAA 1462 Query 1140 GTCTCCTTCACCTCTTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTTTCTAG 1199 |||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1463 GTCTCCATCACCTATTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTATCTGG 1522 Query 1200 GTATTCCCAAGCACACCCTAAACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1259 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1523 GTATTCCCAAGCACACCCTACACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1582 Query 1260 TGCTAAGCTGTCTTCAAACTATTTCATCTCAAATGTTGAAGACATGATGAAAGTTGCTGC 1319 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1583 TGCTAAGCTGTCTTCAAACTACTTCATCTCTAATGTTGAAGACATGATGAAAGTTGCTGC 1642 Query 1320 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTACCTCTTCGTAGTCAGTCCAGT 1379 ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 1643 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTATCTTTTCGTGGTCAGTCCAGT 1702 Query 1380 TGATATAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCACAACTTCTCGAA 1439 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1703 TGATGTAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCAAAACTTCTCGAA 1762 Query 1440 GGCAGGCGTTGTGAGGCTCCGGGAGATACTTGCAGCC-GACAGAGTTAAGGTTCCCAAAA 1498 ||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct 1763 GGCAGGCATTGTGAGGCTCCGGGAGATACTTGCA-CCTGACAGAGTGAAGGTTCCCAAAA 1821 Query 1499 CACCAACAGAACTAAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1558 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1822 CACCTACAGAACTCAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1881 Query 1559 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1882 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1941 Query 1619 TCTGCAATATATTGATTGAGCAATTCTTGGAGGGAAATAGATTAAACTCTCCTACCCGCG 1678 |||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||| Sbjct 1942 TCTGCAATTTATTGATTGAGCAATTCTTAGAGGGAAATAGACTAAACTCTCCTGCCCGCT 2001 Query 1679 TCTCACGATATCTAAGAAAGCAAAAATTCT 1708 |||||||||||||||| ||||||| ||| Sbjct 2002 TCTCACGATATCTAAGGCGGCAAAAACTCT 2031 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84537717780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5