BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890983
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35730.1 | Symbols: | Regulator of Vps4 activity in the MVB... 189 8e-48
AT2G24090.1 | Symbols: | Ribosomal protein L35 | chr2:10241964... 128 2e-29
> AT4G35730.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr4:16931039-16933356 FORWARD LENGTH=1588
Length=1588
Score = 189 bits (102), Expect = 8e-48
Identities = 112/117 (96%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 ATGGATGTGGCTCGGATAAAGCTTCTAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATG 60
|||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATG 240
Query 61 AGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACCGCTCGTATCAGA 117
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 241 AGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACTGCTCGAATCAGA 297
> AT2G24090.1 | Symbols: | Ribosomal protein L35 | chr2:10241964-10243614
FORWARD LENGTH=710
Length=710
Score = 128 bits (69), Expect = 2e-29
Identities = 73/75 (97%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 121 GAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCTACCCTACTTGAAAGTCAAT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 438 GAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCTGCCCTACTTGAAAGTCAAT 497
Query 181 CGAAAGGCAACTTAA 195
|||||||| ||||||
Sbjct 498 CGAAAGGCGACTTAA 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8651832372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5