BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891001
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13670.1 | Symbols: PTAC5 | plastid transcriptionally active... 1808 0.0
> AT4G13670.1 | Symbols: PTAC5 | plastid transcriptionally active
5 | chr4:7948579-7950903 FORWARD LENGTH=1353
Length=1353
Score = 1808 bits (979), Expect = 0.0
Identities = 1120/1185 (95%), Gaps = 21/1185 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCTCTACCTCTGTCTCTTCCGTTTCCACTCCGATCTCGTAGTAGTCCC 60
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||
Sbjct 66 ATGGCTTCTTCTTCTCTACCTCTTTCTCTTCCGTTTCCACTCCGATCTCTTACTAGTACC 125
Query 61 ACTCGAtctctaccttttcgatgctctcctctctttttctctcttccttcttcaatcgtt 120
|||||||||||||| |||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 126 ACTCGATCTCTACCATTTCAATGTTCTCCTCTCTTTTTCTCTATTCCTTCTTCAATCGTT 185
Query 121 tgcttctcCACTCAAAACCCCTCCGGTTACGACCGCGAAGAAGTCCGGTGGCTCCGGGAA 180
||||||||||||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 186 TGCTTCTCCACTCAAAA----TCC-----CGACCGCGAAGAGGTCCGGTGGCTCCGGGAA 236
Query 181 GAGCAAAGATGGATCCGCGAGGAGCAACGATGGCTTCGTGAAGAACAGAGATGGATACGT 240
||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 GAGCAGAGATGGATTCGCGAGGAGCAACGATGGATTCGTGAAGAACAGAGATGGATACGC 296
Query 241 GAGCGTGAATCACTTCTACAAGAGATTTCGGATCTCCAGCTCAAAATTCAATCCCTAGAG 300
|| |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 297 GAACGTGAATCGCTTCTACAAGAGATTTCGGATCTACAGCTCAGAATTCAATCCCTAGAG 356
Query 301 TCACGAAATTCGCAATTGGGGACTTCTGTTCCCGATACGATTTCGAATATCGCTGCGTTG 360
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||
Sbjct 357 TCACGAAATTCGCAATTGGGGAATTCTATTCCCGATACGATTTCGAATATCGCTGCTTTG 416
Query 361 CTTCAGGTTTTGAAGGAGAAGAATCGGATTTCGGAGAGTGGATTGAGCGCAACGCCGATG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 417 CTTCAGGTTTTGAAGGAGAAGAATCGGATTTCTGAGAGTGGATTGAGCGCAACGCCGATG 476
Query 421 GTATTGGAGAGTACGAGAGAACAAATTGTTGAGGAGGTAGAGGAAGTGGAAGAAGAAGTG 480
|||||||||||||||||||||||||||||||||||||| |||| ||||||| | |
Sbjct 477 GTATTGGAGAGTACGAGAGAACAAATTGTTGAGGAGGT---GGAA---GAAGAAG-A--G 527
Query 481 AAGCGAGTGATTATTGCTGAAGAGAAAGTTAGGGTTTCGGAGCCGGTGAAGAAGAAGAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 528 AAGCGAGTGATTATTGCTGAAGAGAAAGTTAGGGTTTCGGAGCCGGTGAAGAAGATCAAG 587
Query 541 ACGAGACGGACATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGGAAGCT 600
| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 A-G-GA-GGATATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGGAAGCT 644
Query 601 TTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 CTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGT 704
Query 661 GGGACTGCAAGTGCTGTTAAGACTTGGCAAGCATCGCTTGGCGTCCGTGAGGATGGGATA 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 705 GGGACTGCAAGTGCTGTTAAGACTTGGCAAGCATCGCTTGGGGTCCGTGAGGATGGGGTA 764
Query 721 ATGACAGCAGAGCTTCTTCAGAGGTTGTTCATGGATGAAGACGTAGAGACAGATAAGGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 ATGACAGCAGAGCTTCTTCAGAGGTTGTTCATGGATGAAGACGTAGAGACAGATAAGGAT 824
Query 781 GAAGCAAGTACAATGAAGAAAGAGGAAGCTGGTAATGGATCGGTATTTAGTTCAGTGACA 840
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 825 GAAGCAAGTACAATGAAGAAAGAGGAAGCTGGTAATGGGGCGGTATTTACTTCAGTGACA 884
Query 841 CAAGTCCCTGAGAAGAAGCAATCAATCATAAAAGATCAAAGTAACAGAGAAGATGACGTT 900
||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||
Sbjct 885 CAAGTCCCTGAGAAGAAGCAATCAATCGTGAAAGATCAAAGTGACAGAGAAGTTGACGTT 944
Query 901 ACTCAAAATCGCGTTTATCTTCTTGGAGAAAACAGATGGGAAGATCCTTCCAGGCTCATT 960
||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 945 ACTCAAAATCGGGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATT 1004
Query 961 GGCAGGAACAAACCGGTAGACAGTAGTAAATCCACAATCACCAAAACGAGGTGCATCACT 1020
||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||
Sbjct 1005 GGCAGGAACAAACCGGTAGACAGAAGTGAATCAACAAACACCAAAACGAGGTGCATCACT 1064
Query 1021 TGTCGAGGGGAGGGTCGATTGATGTGCCTAGAGTGCGATGGAACCGGTGAGCCAAACATT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TGTCGAGGGGAGGGTCGATTGATGTGCCTAGAGTGCGATGGAACCGGTGAGCCAAACATT 1124
Query 1081 GAGCCGCAGTTTATGGAATGGGTTGGTGAAGATACAAAGTGTCCGTACTGTGAAGGTCTT 1140
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1125 GAGCCGCAGTTCATGGAGTGGGTTGGTGAAGATACGAAGTGTCCGTACTGTGAAGGTCTT 1184
Query 1141 GGCTATACAGTTTGCGATGTCTGCGACGGCaaaaaaaaCTTATAA 1185
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGCTATACAGTTTGCGATGTCTGCGACGGCAAAAAAAACTTATAA 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5