BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891034 Length=297 Score E Sequences producing significant alignments: (Bits) Value AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885... 326 9e-89 AT4G04408.1 | Symbols: | pseudogene, similar to Putative histo... 326 9e-89 > AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 FORWARD LENGTH=759 Length=759 Score = 326 bits (176), Expect = 9e-89 Identities = 236/266 (89%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90 |||| ||||| ||||||||| | |||||| |||| ||||||||||||| || |||| ||| Sbjct 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234 Query 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150 ||||| ||| || |||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 235 GGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCTT 294 Query 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210 ||||||| | ||| | ||||||||| | ||||||||||||||||||||||||||||| Sbjct 295 CAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354 Query 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 355 CAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGA 414 Query 271 GTAGGTGTGATCCCTCACATCCACTA 296 | | |||||||||||||||||||||| Sbjct 415 GGAAGTGTGATCCCTCACATCCACTA 440 > AT4G04408.1 | Symbols: | pseudogene, similar to Putative histone H2A, blastp match of 79% identity and 3.0e-31 P-value to GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza sativa (japonica cultivar-group)} | chr4:2184059-2184400 REVERSE LENGTH=342 Length=342 Score = 326 bits (176), Expect = 9e-89 Identities = 236/266 (89%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90 |||||||||| ||||||||| | |||||| |||||||||||||||||| |||||| ||| Sbjct 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 Query 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150 ||||| ||| || |||||||||| ||||||||||||||| ||||||||| |||||||| Sbjct 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180 Query 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210 ||||||| | ||| | | ||| ||| || ||||||||||||||||||||||||||||| Sbjct 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240 Query 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270 ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300 Query 271 GTAGGTGTGATCCCTCACATCCACTA 296 | |||||||||||||||||||||||| Sbjct 301 GGAGGTGTGATCCCTCACATCCACTA 326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13723095477 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5