BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891097
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 601 7e-171
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 324 2e-87
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 257 2e-67
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 248 1e-64
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 137 2e-31
> AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670001-16674966 REVERSE LENGTH=2268
Length=2268
Score = 601 bits (325), Expect = 7e-171
Identities = 604/733 (82%), Gaps = 41/733 (6%)
Strand=Plus/Plus
Query 55 GGTAAGCGAAAGCCG-GATGATAATTTGGAGACCCAA-ACGATTCTGAAGAAACATAAGG 112
|||||||| || ||| || || ||||||| |||| | ||||| |||| |||||||
Sbjct 461 GGTAAGCGTAACCCGCAAT-ATGGTTTGGAG-GCCAACCCAATTCTCAAGAGACATAAGA 518
Query 113 AAACATCCGAGGAGAAGGAGACAACGAAAG--A-TG---TT-G-CT-GAGCAGATGGAGT 163
||| | | || |||||| ||||||||||| | || || | || |||||| || |
Sbjct 519 AAATAAACAAGAAGAAGGTGACAACGAAAGCTATTGCTTTTAGTCTCCAGCAGAACGACT 578
Query 164 TGTTGGAGACAAA----G--C---CTAATTTAATCTCAGTGAAGGAAGCTGCCGTACGAA 214
|||||| |||||| | | |||||||||||||||| ||||||||||| ||| ||
Sbjct 579 TGTTGGTGACAAAGTCTGATCAGGCTAATTTAATCTCAGTCAAGGAAGCTGCAGTAAGAG 638
Query 215 AAAAGACTCTCTTTGTTGGCAATATCCC--ATGCAAGACTAAAATACCAAATATCATCGA 272
| ||||| |||||||||| |||| |||| ||| || |||||||||||||||||||||||
Sbjct 639 AGAAGACGCTCTTTGTTGCCAATCTCCCTTATG-AA-ACTAAAATACCAAATATCATCGA 696
Query 273 TTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTATTCTAAGCCTCAAGGGTAC 332
|||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 697 TTTCTTCAAAAAGGTTGGAGAAGTTGTTCGTGTTCAACTTATTGTAAACCTCAAGGGTAA 756
Query 333 GCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCACTGGA 392
|| |||||| ||||||||||||||||||||||||| ||| ||||||||| |||| ||| |
Sbjct 757 GCTTGTGGGTTGTGGCTTTGTTGAGTTTGCTTCTGTTAATGAAGCAGAGGAGGCGCTGCA 816
Query 393 AAAGAAGAACGGTGAATATTTGGGCGATCATAAGATTGTTCTTGAGGAAGCTACTAAGGG 452
||||||||||||||||| ||| | | || |||||||| ||||||| | |||| ||||
Sbjct 817 AAAGAAGAACGGTGAATGTTTAGACAATAATAAGATTTTTCTTGATGTGGCTAATAAGAA 876
Query 453 AGCTAAATATCTTCCACCCAAGTATTGCTTAGATCACATGGTTTGGTACGAAGACTACCT 512
||||| ||| |||||||||||||||||| ||||||||| ||||||| || |||||||||
Sbjct 877 AGCTACATACCTTCCACCCAAGTATTGCATAGATCACAAGGTTTGGGACAAAGACTACCG 936
Query 513 TCGACGAGAAGGCGGCCTTCCCACAGAAGAAGAGGAGACACCTC-TAGATTCTGTTGAGG 571
| ||| |||| || | | || | ||||||||| |||| ||||| || ||||||||||||
Sbjct 937 TAGACTAGAAAGC--CAT-CCAATAGAAGAAGATGAGAGACCTCCTA-ATTCTGTTGAGG 992
Query 572 AAGTGCTCTTTGTTGCCAATCTCTCTCCCCAAACTAAATTATTACATGTCATCAATTTCT 631
|||| ||||||||||||||||| ||||| ||||||||| ||| | || || || ||||||
Sbjct 993 AAGTACTCTTTGTTGCCAATCTTTCTCCTCAAACTAAAATATCAGATATCTTCGATTTCT 1052
Query 632 TCGAAAA-TGTTGGAAAAGTTGTTAGTGTTCGACTCATTGTAAAC-AGTGAGGGTAAGCA 689
|| || ||||||| ||||||| ||| ||||||| || |||||| | ||| ||||||||
Sbjct 1053 TC-AATTGTGTTGGAGAAGTTGTAAGTATTCGACTTATGGTAAACCA-TGAAGGTAAGCA 1110
Query 690 TGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTGAC-AAAGCAAAGAAGGC-CATGGA- 746
|||||| |||||||||||||||||||||||||||||| ||| |||| ||||| | ||||
Sbjct 1111 TGTGGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAA-CAAAAAAGGCAC-TGGAG 1168
Query 747 AACGAAGAATGGT 759
||| |||||||||
Sbjct 1169 AAC-AAGAATGGT 1180
Score = 320 bits (173), Expect = 2e-86
Identities = 348/430 (81%), Gaps = 22/430 (5%)
Strand=Plus/Plus
Query 806 TTGATTACGAAGACTACCTTCGACGACAAAAG-CTTCTGTTAGAAGAAGATGAGACACCT 864
||| |||||||||||||||||||||| |||| |||| | |||| |||||||||||||||
Sbjct 1270 TTG-TTACGAAGACTACCTTCGACGA-GAAAGCCTTCCGATAGATGAAGATGAGACACCT 1327
Query 865 CCTG-ATTCTGTTGAGGCAGTT-GCTGCAATAAAAAAGACGCTCTTTGTTACCCATCTAT 922
|||| ||| ||||||||||||| || | || |||||||||||||||||| |||||| |
Sbjct 1328 CCTGAATT-TGTTGAGGCAGTTGGC-GTAAGGAAAAAGACGCTCTTTGTTGCCCATC--T 1383
Query 923 TTCA-TC-AAACTGTAATATCACATATCATCAACTTCTTCAAAGATGTTGGAGAAGTTGT 980
||| | |||||| |||| | |||||||| || ||||||||||||||||||||||||||
Sbjct 1384 CTCACGCAAAACTGAAATAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGT 1443
Query 981 TCATGTTCGACTTATTGTAAATCACA-AGGGCAAGAATGTGGGCTGTGGCTTTGTTCAGT 1039
||||||||| |||||| |||| |||| ||| |||| |||||||||||| |||||| |||
Sbjct 1444 TCATGTTCGGCTTATTCTAAACCACACAGG-CAAGCATGTGGGCTGTGCCTTTGTAGAGT 1502
Query 1040 TTGCTTCTATTGACGAAGCAAAGAAGGCACTGCGAAA-GAAGTGTGGTAAAAATTTCCTT 1098
||| |||| | |||||||||||| ||| || |||| ||| ||| || ||||
Sbjct 1503 TTGGTTCTGCTAACGAAGCAAAGATGGCGTTG-GAAACGAAAAACGGTGAATATTTGAAC 1561
Query 1099 GGTCGCGATATTTTTCTTGACGTGGCTGAGATAGCTCCATACCCTCTCCGACC-AAGGTA 1157
| | || | ||||||||||| |||||| |||| | ||||||||||| | ||| ||| ||
Sbjct 1562 GATTGCAAGATTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCTC-C--ACCCAAG-TA 1617
Query 1158 CAACCTTGCAG-AGAAGGTCTGGAACAAAGTCTACCTTCGACAAGAAAGCCTTCTGATAG 1216
| | || | ||||| ||| || ||| ||||||||||| |||||||||||||||||
Sbjct 1618 TTGCATA-CATCACAAGGTTTGGTACGAAGACTACCTTCGACGAGAAAGCCTTCTGATAG 1676
Query 1217 AAGAAGATGA 1226
||||| ||||
Sbjct 1677 AAGAAAATGA 1686
Score = 265 bits (143), Expect = 1e-69
Identities = 289/359 (81%), Gaps = 12/359 (3%)
Strand=Plus/Plus
Query 197 AGGAAGCTGCCGTACGAAAAAAGACTCTCTTTGTTGGCAATATCCCATGCAAGACTAAAA 256
||| || || |||| | |||||||| |||||||||| | || || || |||| ||| |||
Sbjct 1341 AGGCAGTTGGCGTAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCACGCAAAACTGAAA 1400
Query 257 TACCAAATATCATCGATTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTATTC 316
|| | ||||||| ||||||||||| ||||||||||| |||||| ||||| |||||||
Sbjct 1401 TAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGGCTTATTC 1460
Query 317 TAAGCCTCA-AGGGTACGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTAACGAA 375
||| || || | || | |||||||||||||| |||||| ||||||| |||||||||||||
Sbjct 1461 TAAACCACACA-GGCAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTCTGCTAACGAA 1519
Query 376 GCAGAGAAGGCACTGGAAAAGAAGAACGGTGAATATTTGGGCGATCATAAGATTGTTCTT 435
||| ||| ||| |||||| ||| ||||||||||||||| |||| |||||| |||||
Sbjct 1520 GCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGAACGATTGCAAGATTTTTCTT 1579
Query 436 GAGGAAGCT-ACTAAG-GGAGCTAAATATCTTCCACCCAAGTATTGCTTAGATCACATGG 493
|||| | ||||| | | | ||| | |||||||||||||||| || |||||| ||
Sbjct 1580 ---GAAG-TGGCTAAGATG-GTTCCATACCCTCCACCCAAGTATTGCATACATCACAAGG 1634
Query 494 TTTGGTACGAAGACTACCTTCGACGAGAAGGCGGCCTTCCCACAGAAGAAGAGGAGACA 552
||||||||||||||||||||||||||||| || | ||| | ||||||| | ||||||
Sbjct 1635 TTTGGTACGAAGACTACCTTCGACGAGAAAGC--C-TTCTGATAGAAGAAAATGAGACA 1690
Score = 224 bits (121), Expect = 2e-57
Identities = 205/245 (84%), Gaps = 8/245 (3%)
Strand=Plus/Plus
Query 197 AGGAAGCTGCCGTACGAAAAAAGACTCTCTTTGTTGGCAATATCCCATGCAAG-ACTAAA 255
||||| ||||||| |||||||||| |||||||||| |||| || || | || ||||||
Sbjct 1725 AGGAATTTGCCGTAAGAAAAAAGACGCTCTTTGTTGCCAATCTCTCA-CCCAGAACTAAA 1783
Query 256 ATACCAAATATCATCGA-TTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTAT 314
||| || |||||||| | ||| || ||| |||||| |||| |||||||||||| ||||||
Sbjct 1784 ATATCACATATCATCAAGTTT-TTTAAAGATGTTGCAGAAGTTGTTCGTGTTCGACTTAT 1842
Query 315 TCTAAGCCTCAAGGGT-ACGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTAACG 373
| ||| || || |||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1843 TGTAAACCACAGGGGTGA-GCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGTTAACG 1901
Query 374 AAGCAGAGAAGGCACTGGAAAAGAAGAACGGTGAATATTTGGGC-GATCATAAGATTGTT 432
||||| ||||||| ||| |||||| ||| |||||| ||||| || | || | ||||| ||
Sbjct 1902 AAGCACAGAAGGCGCTGCAAAAGATGAATGGTGAAAATTTGCGCAG-TCGTGAGATTTTT 1960
Query 433 CTTGA 437
|||||
Sbjct 1961 CTTGA 1965
> AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=570
Length=570
Score = 324 bits (175), Expect = 2e-87
Identities = 324/393 (82%), Gaps = 22/393 (6%)
Strand=Plus/Plus
Query 864 TCCTGATTCTGTTGAGGCAGTTGCTGCAATAAAAAAGACGCTCTTTGTTACCCATCT--A 921
||| |||| | |||||| |||||||| || |||||||||||||||| || || ||||
Sbjct 85 TCC-GATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGACGCTCTTTATTGCCAATCTCCC 143
Query 922 TTTCATCAAACTGTAATATCACATATCATCAACTTCTTCAAAGATGTTGGAGAAGTTGTT 981
||| | ||| || ||| ||||||||||||| ||||||| |||||||||||||||||||
Sbjct 144 TTTGA--AAAGTGAAATGCCACATATCATCAATTTCTTCAGAGATGTTGGAGAAGTTGTT 201
Query 982 CA-TGTTCGACTTATTGTAAATCACAAGGGCAAGAATGTGGGCTGTGGCTTTGTTCAGTT 1040
| |||||||||||||||| | |||| ||| ||| |||||||||||||||||||| ||||
Sbjct 202 -AGTGTTCGACTTATTGTAGACCACAGGGGTAAGCATGTGGGCTGTGGCTTTGTTGAGTT 260
Query 1041 TGCTTCT-ATTGACGAAGCAAAGAAGGCACTGC--G-AAAGAAGTGTGGTAA-AA-ATTT 1094
||||||| || || ||||||||||||| | || | ||||||| ||| || | ||
Sbjct 261 TGCTTCTGCTT-ACAAAGCAAAGAAGGCGCCGCTGGAAAAGAAG-AACCTAAGAAGA-TT 317
Query 1095 CCTTGG--TCGCGATATTTTTCTTGACGTGGCTGAGATAGCTCCATACCCTCTCCGACC- 1151
| || ||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GC--GGAATCGTTATGTTGTTCTTGACGTGGCTGAGATAGCTCCATACCCTCTCCGACCC 375
Query 1152 AAGGTACAACCTTGCAGAGAAGGTCTGGAACAAAGTCTACCTTCGACAAGAAAGCCTTCT 1211
||| |||||||||||||||||| | ||| || ||| |||||||||| ||||||||||| |
Sbjct 376 AAG-TACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTTCGAGAAGAAAGCCTTTT 434
Query 1212 GATAGAAGAAGATGATTTGGAGGCCAAACCGAA 1244
|||||||| |||||||||||| ||||| |||
Sbjct 435 GATAGAAGCTGATGATTTGGAGAACAAACAGAA 467
Score = 195 bits (105), Expect = 1e-48
Identities = 177/211 (84%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 197 AGGAAGCTGCCGTACGAAAAAAGACTCTCTTTGTTGGCAATATCCC-ATGCAAGACTAAA 255
|||||| ||| ||| |||||||||| |||||| ||| |||| |||| || || | | ||
Sbjct 98 AGGAAGTTGCTGTAAGAAAAAAGACGCTCTTTATTGCCAATCTCCCTTTG-AAAAGTGAA 156
Query 256 ATACCAAATATCATCGATTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTATT 315
|| ||| |||||||| ||||||||| | ||||||||||| ||||| |||||| |||||||
Sbjct 157 ATGCCACATATCATCAATTTCTTCAGAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATT 216
Query 316 CTAAG-CCTCAAGGGTACGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTAACGA 374
| || || || ||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 217 GT-AGACCACAGGGGTAAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAA 275
Query 375 AGCAGAGAAGGCAC---TGGAAAAGAAGAAC 402
|||| ||||||| | ||||||||||||||
Sbjct 276 AGCAAAGAAGGCGCCGCTGGAAAAGAAGAAC 306
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 257 bits (139), Expect = 2e-67
Identities = 246/294 (84%), Gaps = 21/294 (7%)
Strand=Plus/Plus
Query 471 CAAGTATTGCTTAGATCACATGGTTTGGTACGAA-GACTACCTTCGACGAGAAGGCGGCC 529
|||||||||| ||||| ||| |||||| ||| || |||||||||| ||||||| |||
Sbjct 38 CAAGTATTGCATAGATTACACGGTTTGCTAC-AACGACTACCTTCAACGAGAA---AGCC 93
Query 530 TTCCCACAGAAGAAGAGGAGACACC-TCTAGATTCTGTTGAGGAAGTGCTCTTTGTTGCC 588
|||| | ||||||| | |||||||| || |||| |||||||||||| |||| |||||||
Sbjct 94 TTCCGATAGAAGAAAATGAGACACCTTC-CGATTTTGTTGAGGAAGTACTCTATGTTGCC 152
Query 589 AATCTCTCTCCCCAAACTAAATTATTACATGTCATC-AATTTCTTCGAAA-ATGTTGGAA 646
||||||||||||||||||||| |||| ||||||| |||| |||| ||| ||||||||
Sbjct 153 AATCTCTCTCCCCAAACTAAAATATTGCATGTCAAAGAATT-CTTC-AAAGATGTTGGAG 210
Query 647 AAGTTGTTAGTGTTCGACTCATTGTAAACAGTGAGGGTAAGCATGTGGGCTATGGCTTTG 706
||||||||||||||||||| ||||||||| | | ||||||||||||||||||||
Sbjct 211 AAGTTGTTAGTGTTCGACTTATTGTAAACC---A----A-GCATGTGGGCTATGGCTTTG 262
Query 707 TTGAGTTTGCTTCTGCTGACAAAGCAAAGAAGGC-CATGGAAACGAAGAATGGT 759
|||| ||||||||| || || ||||||||||||| | || ||| ||||||||||
Sbjct 263 TTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGC-TGCAAAAGAAGAATGGT 315
Score = 145 bits (78), Expect = 1e-33
Identities = 157/194 (81%), Gaps = 10/194 (5%)
Strand=Plus/Plus
Query 197 AGGAAGCTGCCGTACGAAAAAAGACTCTCTTTGTTGGCAATATC-C-CATGCAAGACTAA 254
||| || ||| ||| |||||||||| ||||||||| | | || | | | ||| || |
Sbjct 497 AGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTC-CGGAAG-CTCA 554
Query 255 AATACCAAATATCATCGATTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTAT 314
|||| || |||||||| ||||||||||| | |||||| || |||| | ||||| ||||||
Sbjct 555 AATATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTAT 614
Query 315 TCTAAGCCT-CAAGGG-TACGCATGTGGGCTG-TGGCTTTGTTGAGTTTGCTTCTGCTAA 371
| | || || || ||| | |||||||||| | |||||||||||||||||||||||||||
Sbjct 615 TGT-AGACTACACGGGCGA-GCATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAA 671
Query 372 CGAAGCAGAGAAGG 385
||||||||||||||
Sbjct 672 CGAAGCAGAGAAGG 685
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 248 bits (134), Expect = 1e-64
Identities = 266/328 (81%), Gaps = 15/328 (5%)
Strand=Plus/Plus
Query 197 AGGAAGCTGCCGTACGAAAAAAGACTCTCTTTGTTGGCAATATCCCATG-CAAGACTAAA 255
||||||||||| || | |||| || |||||||||| |||| | || || | | | |
Sbjct 722 AGGAAGCTGCCATA--ACAAAA-ACGCTCTTTGTTGCCAATCT-CCGTGACTCCATTCAG 777
Query 256 ATACCAAATATCATCGATTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTATT 315
||| || |||||||| ||||||||||| ||||||||||| |||||| ||||| |||||||
Sbjct 778 ATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGACTTATT 837
Query 316 CTAAGCCTCAAGGGTACGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTAACGAA 375
||| | | |||| | ||||| |||||| || |||||||||||||||||||||||||||
Sbjct 838 GTAAACAGCCAGGGAAAGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAA 897
Query 376 GCAGAGAAGGCACTGGAAAAGAAGAACGGTGAATATTTGGGCGATCATAAGATTGT-TCT 434
||||||||||| |||| |||||| ||||||||||||| | || | |||||| | |||
Sbjct 898 GCAGAGAAGGCGCTGGTAAAGAA---CGGTGAATATTTGCACAATTACAAGATT-TCTCT 953
Query 435 TGA-GGAAGCTACTAAGGGAGCTAAATATCTTCCACCCAAGTATTGCTTAGATCACATGG 493
||| ||| |||| | | |||| | | | ||||||||||| |||| ||||||||| ||
Sbjct 954 TGACGGA-GCTA--A-GACAGCTCCACACCGTCCACCCAAGTTTTGCCTAGATCACAAGG 1009
Query 494 TTTGGTACGAAGACTACCTTCGACGAGA 521
||||||||||||||||||||||| ||||
Sbjct 1010 TTTGGTACGAAGACTACCTTCGAAGAGA 1037
Score = 176 bits (95), Expect = 5e-43
Identities = 287/375 (77%), Gaps = 31/375 (8%)
Strand=Plus/Plus
Query 863 CTCCTGATTCTGTTGAGGCAGTTGCTGCAATAA-AAAAGACGCTCTTTGTTACCCATCTA 921
|||||| || || ||||| | ||||| |||| |||| |||||||||||| || ||||
Sbjct 707 CTCCTGGTTTTGCTGAGG-A--AGCTGCCATAACAAAA-ACGCTCTTTGTTGCCAATCTC 762
Query 922 TTTCA-T-CAAACTGTAATATCACATATCATCAACTTCTTCAAAGATGTTGGAGAAGTTG 979
| | | || | | |||||| |||||||||| |||||||||||||||||||||||||
Sbjct 763 CGTGACTCCATTCAG--ATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTG 820
Query 980 TTCATGTTCGACTTATTGTAAATCA-CAAGGGCAAGAATGTGGGCTGTGGCTTTGTTCAG 1038
|||||||||||||||||||||| || | |||| ||| ||| |||||| || |||||| ||
Sbjct 821 TTCATGTTCGACTTATTGTAAA-CAGCCAGGGAAAGCATGCGGGCTGGGGTTTTGTTGAG 879
Query 1039 TTTGCTTCTATTGACGAAGCAAAGAAGGCACTGCG-AAAGAA-GTGTGGTAAAAATTTCC 1096
||||||||| | |||||||| ||||||| ||| | |||||| | ||| || | ||| |
Sbjct 880 TTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTG-GTAAAGAACG-GTG--AATA-TTTGC 934
Query 1097 TTGGTCGCGATATTTTTCTTGACGTG-GCTGAGATAGCTCCATACCCTCTCCGACC-AAG 1154
| | | |||| |||||||| | ||| ||| ||||||| ||| || | ||| |||
Sbjct 935 ACAATTACAAGATTTCTCTTGACG-GAGCTAAGACAGCTCCACACCGTC-C--ACCCAAG 990
Query 1155 GTACAACCTTGCAG-AGAAGGTCTGGAACAAAGTCTACCTTCGACA-AGAAAGCCTTCTG 1212
| ||| | | | ||||| ||| || ||| |||||||||| | ||| ||||||||
Sbjct 991 TTTTG-CCTAG-ATCACAAGGTTTGGTACGAAGACTACCTTCGA-AGAGAGAGCCTTCTC 1047
Query 1213 AT-AGAAGAAGATGA 1226
|| | |||||| |||
Sbjct 1048 ATTA-AAGAAGTTGA 1061
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 137 bits (74), Expect = 2e-31
Identities = 117/137 (85%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 626 ATTTCTTCGAA-AATGTTGGAAAAGTTGTTAGTGTTCGACTCATTGTAAACAGTGAGGGT 684
|||||||| || |||||||| ||||||||||||||||||| ||||||| | ||| ||
Sbjct 2219 ATTTCTTC-AATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGAGT 2277
Query 685 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCT-GACAAAGCAAAGAAGGC-CA 742
|||||||||||||||||||||||||||||||||||| || | | |||||| | ||| |
Sbjct 2278 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTG-CTTAGCAAACATGGCGC- 2335
Query 743 TGGAAACGAAGAATGGT 759
|||||| ||||||||||
Sbjct 2336 TGGAAAAGAAGAATGGT 2352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5