BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891414 Length=1821 Score E Sequences producing significant alignments: (Bits) Value AT1G59780.1 | Symbols: | NB-ARC domain-containing disease resi... 1441 0.0 AT5G05560.1 | Symbols: EMB2771 | E3 ubiquitin ligase, putative ... 254 3e-66 > AT1G59780.1 | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:21993581-21997691 REVERSE LENGTH=2721 Length=2721 Score = 1441 bits (780), Expect = 0.0 Identities = 1262/1482 (85%), Gaps = 83/1482 (6%) Strand=Plus/Plus Query 199 AAGGAGATGATTAAACATTGTGGAGGACTACCATTGGCTGTCAAAGTGTTAGGAGGGTTG 258 |||||||||| ||||||||| | |||||||||||||||||||| ||||||| ||||| Sbjct 1036 AAGGAGATGACAAAACATTGTAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTA 1095 Query 259 TTAGCTGCAAAACACACATCGCGTCAGTGGAAAATGATATCTGAGAATATTAAAGCTCAC 318 |||| ||| |||||||||| ||||||||||||| |||||||||||||||||| | ||||| Sbjct 1096 TTAGATGCCAAACACACATTGCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCAC 1155 Query 319 ATAGTTGAAGG-GCGGATTAGTTCCAATGATGACGATAGCAGTACGGTTAATCATGTTTT 377 ||||||| || | ||| |||||||||||| ||||||||||| ||||||| |||||| | Sbjct 1156 ATAGTTGTTGGAG-GGACTAGTTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCT 1214 Query 378 GTCTTTGAGCTATGAAGGATTGCCTAGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 437 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1215 GTCTTTGAGCTTTGAAGGATTGCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 1274 Query 438 TTATCCAGAAGATCATAAAATAAAAATAGACAGATTGTCTTATGTCTGGGCTGCAGAAGG 497 |||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1275 TTATCCCGAAGATCATGAAATCGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGG 1334 Query 498 AATAACAAATCCTAGGCATTACGATGGAGCTTCCATTCGACATAATGCGGATCTCAACAT 557 ||||||| ||||| || ||||||| |||||| |||||||| || |||||||||| |||| Sbjct 1335 AATAACATATCCTGGGAATTACGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACAT 1394 Query 558 AAAAGAGTTAGTGAAGAGAAATATGGTTATTTCTGAAAGAGACGTGTTTATTTCGAGATT 617 | ||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||| Sbjct 1395 AGAAGAGTTAGTGAAGAGAAATATGGTTATTTCCGAAAGAGACGCGTTGACTTCGAGATT 1454 Query 618 TGAATATTGTCAGTTGCATGACTTGATGAGAGAGATTTGTTTGTTAAAAGGCAAGGAAGA 677 |||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 1455 TGAAAAATGTCAGTTGCATGACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGA 1514 Query 678 GAGCTTTATAAAGATTGTTAGTGATCCAGCCAGCAGATCA--CGTAGACTC----G-TT- 729 || |||| || ||||||||| ||||||| ||||||| ||| |||| |||| | || Sbjct 1515 GAACTTTTTACAGATTGTTACTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTC 1574 Query 730 --G----T---GT----TC-T-GT--ACAGACAC---T-TTTA-A-TGGAGAGAGGGACA 766 | | || || | || ||| |||| | ||| | |||||||| || | Sbjct 1575 TAGCAGATCACGTAGACTCGTAGTGTACA-ACACCAGTATTTTTAGTGGAGAGAACGATA 1633 Query 767 TTGA-GAATTCCAAACTTAGATCTCTCTTGTTTATTCTAGTTTCGTATCG--G-TTTGCG 822 | || |||||||||||||||||||||||||||||||| |||| |||| | | ||| || Sbjct 1634 T-GAAGAATTCCAAACTTAGATCTCTCTTGTTTATTCCAGTTGGGTATAGTAGGTTTTCG 1692 Query 823 ATGAGATCAGACTTCAT-GATGTTACCATTGTTGAGGGTTTTAGATCTC-AGTAGAGCTG 880 ||| ||||| ||||||| || |||||||||||||||||||||||||||| | | ||||| Sbjct 1693 ATGGGATCAAACTTCATAGA-GTTACCATTGTTGAGGGTTTTAGATCTCGA-TGGAGCTA 1750 Query 881 AATTTGAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 940 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1751 AATTTAAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 1810 Query 941 GTTTATAT-ATGGCATATGTAACTCATCTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 999 |||||||| | ||||| ||||||| || |||||||||||||||||||||||||||||||| Sbjct 1811 GTTTATATCA-GGCATCTGTAACTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 1869 Query 1000 CTCTA-CTTCAATCTA-GAAATTTATAATCCTCGAGGTGACGC-GCATTA-CGTGCCCAA 1055 ||||| || ||||||| | | | | ||| || | | | | || | |||| ||||||||| Sbjct 1870 CTCTATCT-CAATCTACGTA-T--A-AATTCT-G-G-TCA-GCTG-ATTAACGTGCCCAA 1919 Query 1056 TGTCTTCAAAGAGATGCTAGAACTGAGATACTTCT-CGTTACCAAGGAGAAC-AACTAGT 1113 |||||| |||||||||||||||||||||||| || | |||||| || ||| || |||| Sbjct 1920 TGTCTTTAAAGAGATGCTAGAACTGAGATACCTCAGC-TTACCATGG-GAAAGAAGTAGT 1977 Query 1114 AGGACAAAGTTGGAATTGGGTAATCTACTCAAATTGGAGACGTTGA-AGAATTTCTCAAC 1172 ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1978 TTGACAAAGTTGGAACTGGGTAATCTACTCAAATTGGAGACGTTGATA-AATTTCTCAAC 2036 Query 1173 AGAGAATAGCAATGTGACGGATCTTCACTGTATGAGAAGGCTAAGGAGTCTCCAGATCTT 1232 | || |||||| |||||| ||||||||| |||||| || |||||||| ||||| ||||| Sbjct 2037 AAAGGATAGCAGTGTGACAGATCTTCACCGTATGACAAAGCTAAGGACCCTCCAAATCTT 2096 Query 1233 AATCAGTGGCGAGGGGTGGCGTATGGAAACTCTATCATCAACTCTCGGTGAA-TTGAAAC 1291 ||||||||||||||||| || |||||||||||| || ||| |||| || | ||| || Sbjct 2097 AATCAGTGGCGAGGGGTTGCATATGGAAACTCTGTCTTCAGCTCTAAGT-ATGTTGGGAC 2155 Query 1292 ACTTGGAACG-TCT-ACTTATAAAATCTCCCAAGAATTCTGTTCA-TCTCAAGCACCCAA 1348 |||||||| | ||| || ||| | || || ||||||| ||||| | |||||||||| | Sbjct 2156 ACTTGGAA-GATCTTACAG-TAACACCTTCCGAGAATTCCGTTCAGT-TCAAGCACCCGA 2212 Query 1349 AGTTGATATATAGGCCAATGTTACCTGACGTGCAACATTTTCCTTCTCATCTTACAACCA 1408 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2213 AGTTGATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTTCTCATCTTACAACCA 2272 Query 1409 TATCTCTA--A-ATGGTTCTCGTTTGGAGGAGGATCCGATGCCAATTCTAGAGAAACTGC 1465 |||||||| | || ||| | ||||||||||||||||||||||| |||||||||||||| Sbjct 2273 TATCTCTAGTATATTGTT-T--TTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACTGC 2329 Query 1466 TACAATTGAAA-TGGGTTTCTTTATGGGAGAACGCTTATGTTGGGAGGAGAATGGTTTGC 1524 ||||| ||||| ||| ||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 2330 TACAACTGAAAGTGG-TTTCTTTATGGTACAACGCCTATGTTGGGAGGAGAATGGTTTGC 2388 Query 1525 TCCAGCGGTGGGTTTCCTCAATTGCATGGGCTCTCAA-TAAGCATACTAGAGGAATGGGA 1583 || ||||||||||||||| |||||| |||| | || || | |||||| | | ||| Sbjct 2389 ACCGGCGGTGGGTTTCCTCCATTGCACAGGCT-TGAAATATGGGGACTAGATGCCTTGGA 2447 Query 1584 AGAGTGGATTGTAGAAGAAGGCTCCATGCCACAACTTCATAC 1625 ||||||||| |||||||||||||||||||| | |||||||| Sbjct 2448 AGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATAC 2489 > AT5G05560.1 | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654756 FORWARD LENGTH=5108 Length=5108 Score = 254 bits (137), Expect = 3e-66 Identities = 165/179 (92%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1 ATGAAGGACTACGATGAGAGAACAATTTGGACATGTGACCATCTACCTCTTATGACGTCA 60 |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| Sbjct 676 ATGAAGGACTACGATGAGAGGACAATTTGGACAAGTGACCGTCTACCTCTTATGACGTCG 735 Query 61 TATAACAAAGGCAAGATGCAACATTCTGTGTGGAAAGCCGAATTTATAGATTCAAACCTT 120 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 736 TATAACAAAGGCAAGATGCAACATTCTGTGTGGGCGGCCGAATTTATAGAGTCAAACCTT 795 Query 121 GAAGCTTCTGCTTCATGTTCAAGCGGTGTTGTTCCTGATGCTGTTTTCCCAAAGCGGGT 179 ||||||||||| |||||||||||||| ||||||||||||||||| || | |||||||| Sbjct 796 GAAGCTTCTGCGTCATGTTCAAGCGGCATTGTTCCTGATGCTGTTCTCTCGAAGCGGGT 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90109978275 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5