BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891774
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39570.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1101 0.0
> AT5G39570.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:15843959-15846178 FORWARD LENGTH=1559
Length=1559
Score = 1101 bits (596), Expect = 0.0
Identities = 718/773 (93%), Gaps = 23/773 (3%)
Strand=Plus/Plus
Query 405 ATCTGGATACGGTGGACAAACGGAGGTGGAGTATGGTCGGAGACCTGAGCAGAGTTATGG 464
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 ATCTGGCTATGGTGGACAAACGGAGGTGGAGTATGGTCGGAGACCTGAGCAGAGTTATGG 496
Query 465 ATCTGGTTATGGTGGAAGGACGGAGACTGAATCGGAGTATGGATCTGGTGGTGGTGGAAG 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 ATCTGGTTATGGTGGAAGGACGGAGACTGAATCGGAGTATGGATCTGGTGGTGGTGGAAG 556
Query 525 AACTGAGGTTGAGTATGGTCGGAGACCTG----A--------ATCTGGTTATGGTGGGAG 572
||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 557 AACTGAGGTTGAGTATGGTAGGAGACCTGAATCAGGGCTTGGATCTGGTTATGGTGGGAG 616
Query 573 ATCGGAGACTGAGTATGAGCGTAAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGG 632
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 ATCGGAGTCTGAGTATGAGCGTAAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGG 676
Query 633 TTATAGAAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGTTATAGGAAGCCTAG 692
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 677 TTATAGGAAGCCTAGCTATGGAAGATCTGAAGAACAAGAGGAAGGTTACAGGAAGCCAAG 736
Query 693 CTATGGAAGATCTGAAGAACAAGAGGAAGGTTATAGGAAGCCAAGTTATGGAAGATCT-- 750
|||||||||||||| || || || ||||| ||||| ||||| || ||||||||||||
Sbjct 737 TTATGGAAGATCTGAGGAGCAGGAAGAAGGATATAGAAAGCCTAGCTATGGAAGATCTGA 796
Query 751 -GAGGAAGAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGG---AAGAGGA 806
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 797 GGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGA 856
Query 807 AGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGAGGATCAGGTGGAGAGTTACATTAA 866
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 857 AGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGATGATCAGGTGGAGAGTTACATTAA 916
Query 867 GCCTAGCTATGGAAGGTCTGAGGATCAGGAGGAAGGAAGTTATAGGAAGCCTAGCTATGG 926
||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 917 GCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGG 976
Query 927 GAGGTCTGAGGAGCAGGAAGAGGGGAGTCACAGG-A--AGCCTAGCTATGGCCGTGGCAA 983
|||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 977 GAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAAGCAGCCTAGCTATGGCCGTGGCAA 1036
Query 984 TGACGATGATGATGATGAGCAGCGTAGGAACCGTTCTGGTTCTGGTGATGATGAGGAAGG 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGACGATGATGATGATGAGCAGCGTAGGAACCGTTCTGGTTCTGGTGATGATGAGGAAGG 1096
Query 1044 GAGCTATGGCCGCAAGAAATATGGTGACAATGACTCTGATGAGGATGAGGAGAAGAAGAA 1103
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1097 GAGCTATGGCCGCAAGAAATATGGTGGCAATGACTCTGATGAGGATGAGGAGAAGAAGAA 1156
Query 1104 GCACCGTTACAAGCAGCGCCACCAGA-GACGTCGTGATGAAGACGATGACTAA 1155
||||||| ||||||| | |||||||| | |||||||| ||||||||||| |||
Sbjct 1157 GCACCGTCACAAGCATCACCACCAGAAG-CGTCGTGACGAAGACGATGAGTAA 1208
Score = 610 bits (330), Expect = 9e-174
Identities = 377/400 (94%), Gaps = 2/400 (1%)
Strand=Plus/Plus
Query 1 ATGCCGTACTACACCAGAGACGA-AGACGATGTCGACGATTTTGATGAGTTTGATCCAAC 59
||||||||||| |||||||| || | |||| ||||||||||| |||||||||||||||||
Sbjct 63 ATGCCGTACTATACCAGAGATGACA-ACGACGTCGACGATTTCGATGAGTTTGATCCAAC 121
Query 60 GCCGTACAGTGGTGGTTACGACATCACGGTGATTTACGGCCGTCCGATTCCACCTTCCGA 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 GCCGTACAGTGGTGGTTACGACATCACGGTGATCTACGGCCGTCCGATTCCACCTTCCGA 181
Query 120 TGAGACTTGTCACCCTCTCTCATCTGGCGTCGATGATGATTTCGAATACGAGAGACCTGA 179
|||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 182 TGAGACTTGTTATCCTCTCTCATCTGGTGTCGATGATGATTTCGAATACGAGAGACCTGA 241
Query 180 ATTTACTCAGATCCATGAACCTTCTGCTTATGGAGATGAAGCTCTTAACACAGAGTACAG 239
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 242 ATTTACTCAGATCCATGAGCCTTCTGCTTACGGTGATGAAGCTCTTAACACAGAGTACAG 301
Query 240 TAGCTACTCTCGACCCAAGCCACGACCCGCATTTCGACCCGATTCAGGTGGTGGTGGTCA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TAGCTATTCTCGACCCAAGCCACGACCCGCATTTCGACCCGATTCAGGTGGTGGTGGTCA 361
Query 300 TGTTCAAGGCGAAAGACCAAATCCTGGTTATGGATCTGGATCCGGTTATGGGAGAAAACC 359
||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 362 TGTTCAAGGTGAAAGACCAAATCCTGGTTATGGATCTGAATCCGGTTATGGGAGGAAACC 421
Query 360 GGAATCGGAGTATGGATCCGGTTATGGTGGTCAGACGGAG 399
|||||| ||||| ||||| || |||||||| || ||||||
Sbjct 422 GGAATCTGAGTACGGATCTGGCTATGGTGGACAAACGGAG 461
Score = 366 bits (198), Expect = 2e-100
Identities = 296/342 (87%), Gaps = 11/342 (3%)
Strand=Plus/Plus
Query 640 AAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGA 699
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 639 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGGAAGCCTAGCTATGGA 698
Query 700 AGATCTGAAGAACAAGAGGAAGGTTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAA 759
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 699 AGATCTGAAGAACAAGAGGAAGGTTACAGGAAGCCAAGTTATGGAAGATCTGAGGA-GCA 757
Query 760 G-AGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGAAG-G-AAG-TTA 815
| | ||||| ||||| |||||||||||||||||||||||||| || ||| | ||| |||
Sbjct 758 GGAAGAAGGATATAGAAAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGAGGAAGGTTA 817
Query 816 CAGGAAACCTAGTTATGGGAGGTCTGAGGATCAGGTGGA-G-A-GTTACATTAAGCCTAG 872
||||| ||||| ||||| || |||||||| || | ||| | | |||||| || |||||
Sbjct 818 TAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCTAG 877
Query 873 CTATGGAAGGTCTGAGGATCAGGAGGAAGGAAGTTATAGGAAGCCTAGCTATGGGAGGTC 932
||||| |||||||| ||||||| ||| | | |||| | |||||||||||||| || ||
Sbjct 878 TTATGGGAGGTCTGATGATCAGGTGGA-G-A-GTTACATTAAGCCTAGCTATGGAAGATC 934
Query 933 TGAGGAGCAGGAAGAGGGGAGTCACAGGAAGCCTAGCTATGG 974
|||||| ||||| ||||| ||| ||||||||||||| |||||
Sbjct 935 TGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGG 976
Score = 294 bits (159), Expect = 1e-78
Identities = 256/300 (85%), Gaps = 17/300 (6%)
Strand=Plus/Plus
Query 595 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGAAAGCCTAGCTATGGA 654
||||| || |||||||| |||||||| || |||||||| |||||||||||||||||||||
Sbjct 729 AAGCCAAGTTATGGAAGATCTGAGGAGCAGGAAGAAGGATATAGAAAGCCTAGCTATGGA 788
Query 655 AGATCT---GAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAAGAA 711
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 789 AGATCTGAGGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAA 848
Query 712 CAAGAGGAAGG---TTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGA-AGG 767
||||||||||| ||| ||||| || |||||||| || ||||| || | | ||| ||
Sbjct 849 CAAGAGGAAGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGATGATCAGGTGGAGAG- 907
Query 768 TTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGA--AGG-AAGTTACAGGAAACC 824
||| | ||||||||||||||||||||||||||| |||| ||| |||||||||||| ||
Sbjct 908 TTACATTAAGCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCC 967
Query 825 TAGTTATGGGAGGTCTGAGGATCAGGTGGAG---AGTTACATTAAGC--C-TAGCTATGG 878
||||||||||||||||||||| |||| ||| ||||||| |||| | |||||||||
Sbjct 968 TAGTTATGGGAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAAGCAGCCTAGCTATGG 1027
Score = 226 bits (122), Expect = 4e-58
Identities = 207/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 730 AAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGAAGGTTATAGGAAGCCTAGCTATGGA 789
||||| || |||||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 639 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGGAAGCCTAGCTATGGA 698
Query 790 AGATCTGAGGAAGAGGAAGGAAG-TTACAGGAAACCTAGTTATGGGAGGTCTGAGGATCA 848
|||||||| ||| | || ||||| ||||||||| || |||||||| || |||||||| ||
Sbjct 699 AGATCTGAAGAACAAGA-GGAAGGTTACAGGAAGCCAAGTTATGGAAGATCTGAGGAGCA 757
Query 849 GGTGGAGAGT-TACATTAAGCCTAGCTATGGAAGGTCTGAGGATCAGGAGGAAGGAAG-T 906
|| || || || | ||||||||||||||||| |||||||| | | || ||||| |
Sbjct 758 GGAAGA-AGGATATAGAAAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGA-GGAAGGT 815
Query 907 TATAGGAAGCCTAGCTATGGGAGGTCTGAGGAGCAGGAAGAGGGGAGTCACAGGAAGCCT 966
|||||||||||||||||||| || |||||||| || || || || ||| ||||||| |||
Sbjct 816 TATAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCT 875
Query 967 AGCTATGG 974
|| |||||
Sbjct 876 AGTTATGG 883
Score = 211 bits (114), Expect = 1e-53
Identities = 212/256 (83%), Gaps = 19/256 (7%)
Strand=Plus/Plus
Query 595 AAGCCTAGCTATGGAAGGTCT---GAGGAACAAGAAGAAGGTTATAGAAAGCCTAGCTAT 651
||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 774 AAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTAT 833
Query 652 GGAAGATCTGAGGAACAAGAGGAAGG---TTATAGGAAGCCTAGCTATGGAAGATCTGAA 708
|||||||||||||||||||||||||| ||| ||||| ||||| ||||| || |||||
Sbjct 834 GGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGAT 893
Query 709 GAACAAGAGGA-AGGTTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGA--AG-AGG- 763
|| || | ||| || ||| | ||||| || |||||||||||||||||| | || |||
Sbjct 894 GATCAGGTGGAGAG-TTACATTAAGCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGG 952
Query 764 AAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGAAG-GA--AGTTACAGGA 820
||| ||| ||||||||||| ||||| || ||||||||| |||||| | ||||||||||
Sbjct 953 AAG-TTACAGGAAGCCTAGTTATGGGAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGA 1011
Query 821 A--A-CCTAGTTATGG 833
| | ||||| |||||
Sbjct 1012 AGCAGCCTAGCTATGG 1027
Score = 97.1 bits (52), Expect = 3e-19
Identities = 116/145 (80%), Gaps = 12/145 (8%)
Strand=Plus/Plus
Query 598 CCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAG-GTTATAGAAAGCCTAGCTATGGAAG 656
||||| ||||| |||||||| || | || | || |||| | |||||||||||||||||
Sbjct 873 CCTAGTTATGGGAGGTCTGATGATC-AGGTGGAGAGTTACATTAAGCCTAGCTATGGAAG 931
Query 657 ATCTGAGGAACA--AG-AGG-AAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAAGAAC 712
|||||||||||| || ||| ||| ||| ||||||||||| ||||| || ||||| ||||
Sbjct 932 ATCTGAGGAACAGGAGGAGGGAAG-TTACAGGAAGCCTAGTTATGGGAGGTCTGAGGAAC 990
Query 713 A--A-GAGGA-AGGTTATAGGAAGC 733
| | |||| || ||| |||||||
Sbjct 991 AGGAAGAGGGGAG-TTACAGGAAGC 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5