BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892011
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01960.1 | Symbols: | RING/U-box superfamily protein | chr5... 2008 0.0
> AT5G01960.1 | Symbols: | RING/U-box superfamily protein | chr5:370400-372969
FORWARD LENGTH=1807
Length=1807
Score = 2008 bits (1087), Expect = 0.0
Identities = 1230/1296 (95%), Gaps = 21/1296 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACGCCCGGCGGCAATCATGATTCCTTTAGGGGTTCTCCTCGTAGAAACTCCATC 60
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 333 ATGGAAACGCCCGGCGCCAGTCATGATTCATTTAGGGGTTCTCCTCGTAGAAACTCCATC 392
Query 61 CTCTCTGCTTCTAACATCATCCAGGCCCCCATTTCTACCTTGTTAGAGTATTCGGGTCTC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 393 CTCTCTGCTTCTAACATCATCCAGGCCCCTATTTCTACCTTGTTAGAGTATTCGGGTCTC 452
Query 121 TTTCGCA-CTAGGCCTAA-TCCTAGTCACGAGGCTGAAACGCTGGTCAGTGATGATTCTT 178
||||| | ||||||| || ||||||||| |||||||| ||||| || |||||||||||||
Sbjct 453 TTTCG-AGCTAGGCC-AAGTCCTAGTCATGAGGCTGAGACGCTTGTTAGTGATGATTCTT 510
Query 179 CAGGAATCTCCAATGGGGAGGTTGCCATTAGGATCATTGGCAACGGGGAGCAGGATCCTG 238
||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 511 CAGGACTCTCCAATGGGGAGGTTGCCATTAGGATCATTGGCAACACCGAGCAGGATGCTG 570
Query 239 AAACTGATAGCAATGGTCTCAGGGAACCCGGCGGCCTTGGACACACTGAACTTTTGGGTT 298
||||||||| ||||| ||| |||||| | || |||||| ||||||| |||||||
Sbjct 571 AAACTGATACCAATGCTCTGAGGGAA-----C--CC--GGACACTCTGAACTCTTGGGTT 621
Query 299 C-TC--CTACTCAGGTTGATCCCATAGGAGGTGCTCCTGCAGAAGGTGCCTCTCAGGATG 355
| || ||||||||||||||||||| ||||||||| | |||||||||||||||||| ||
Sbjct 622 CTTCTGCTACTCAGGTTGATCCCATGGGAGGTGCT--T-CAGAAGGTGCCTCTCAGGCTG 678
Query 356 CTCCTGGTGAAT-CTGTTGCTGGAGACGCCGCTACCCGGGATTCACCTTACCAAAGATAT 414
|||| |||| || ||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct 679 CTCCAGGTG-ATCCTGCTGCTGGAGACGCCGCTTCCCGGGATTCGCCTTACCAAAGATAT 737
Query 415 GATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTG 797
Query 475 GTTGTTTTTATCCGTCAGCATTTGCAGGGGTTCTTTGTCGCTATTTGGATTGCTGCTGTC 534
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 798 GTTGTTTTTATCCGCCAGCATTTGCAGGGGTTCTTTGTCGCCATTTGGATTGCTGCTGTC 857
Query 535 ATGTTCAAGTCAAATGATATTCTCAAGAAGCAAACAGCTTTAAAGGGTGAGAGGCATATC 594
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 858 ATGTTCAAGTCAAATGATATTCTCAAGAAGCAAACAGCTTTGAAGGGTGAGAGGCATATC 917
Query 595 TCTGCATTAATTGGAATCTCTGTAGCATTTACGGCCCATGTTGTTGGTGTTTATTGGTGG 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCGGCATTAATTGGAATCTCTGTAGCATTTACGGCCCATGTTGTTGGTGTTTATTGGTGG 977
Query 655 TTTAGGAAAGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCT 714
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TTTCGGAAGGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCT 1037
Query 715 TTCTGGCATGCCATTTTTATCATAGTGGTTAATGATACACTTGTCCGACAGGCCTCAATG 774
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1038 TTCTGGCATGCCATTTTTATCATAGTGGTGAATGATACACTTGTCCGGCAGGCCTCAATG 1097
Query 775 ATTTTCAAGTGTTTTCTGTTGATGTACTACAAAAACAGTAGGGGTCGAAATTATCGTAAA 834
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1098 ATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAA 1157
Query 835 CAGGGTCAATTGCTAACTTTGGTTGAATATTTGATGCTTTTGTATCGCTCTTTACTGCCT 894
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1158 CAGGGTCAATTGCTAACTTTGGTTGAATATTTCATGCTTCTGTATCGCTCTTTACTGCCT 1217
Query 895 ACCCCTGTATGGTACCGTTTCTTCTTGAACAAGGATTATGGAAGCCTCTTCTCCTCTCTT 954
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1218 ACCCCTGTATGGTACCGTTTCTTTTTGAACAAGGATTATGGAAGCCTCTTCTCCTCTCTT 1277
Query 955 ATGACGGGATTATATCTTACATTCAAGCTCACTTCAGTTGTTGAGAAGGTTCAATCCTTC 1014
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1278 ATGACGGGATTGTATCTTACATTCAAGCTCACTTCAGTAGTTGAGAAGGTTCAATCCTTC 1337
Query 1015 TTTACGGCATTGAAGGCTTTGTCACGTAAAGAGGTGCATTACGGATCATATGCAACTACA 1074
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1338 TTTACGGCATTGAAGGCTTTGTCACGTAAAGAGGTGCACTACGGATCATATGCAACTACA 1397
Query 1075 GAGCAGGTAAATGCGGCAGGCGACCTGTGTGCCATCTGCCAGGAGAAGATGCACACCCCA 1134
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GAGCAGGTAAATGCAGCAGGCGACCTGTGTGCCATCTGCCAGGAGAAGATGCACACCCCA 1457
Query 1135 ATTCTTCTTCGCTGCAAACACATGTTTTGCGAAGATTGCGTTTCGGAGTGGTTTgagaga 1194
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1458 ATTCTTCTTCGCTGCAAACACATGTTTTGCGAAGATTGCGTTTCAGAGTGGTTTGAGAGA 1517
Query 1195 gagagaACGTGTCCTCTGTGCAGGGCCTTGGTCAAACCAGCAGATCTAAAATCATTCGGT 1254
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1518 GAGAGGACGTGTCCTTTGTGCAGGGCCTTGGTCAAACCAGCAGATCTGAAATCATTCGGT 1577
Query 1255 GATGGATCCACCAGCCTCTTCTTCCAGATTTTCTGA 1290
||||||||||||||||||||||||||||||||||||
Sbjct 1578 GATGGATCCACCAGCCTCTTCTTCCAGATTTTCTGA 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5