BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892077

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   361    2e-99


> AT5G01350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 
chr5:145636-147200 REVERSE LENGTH=547
Length=547

 Score =  361 bits (195),  Expect = 2e-99
 Identities = 211/219 (96%), Gaps = 0/219 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGGAGGAGGAAACTTTATTGCGAGAGTGATCTCATACGTTGCAAACGAGTTCATA  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  100  ATGGCGGGAGGAGGAAACTTTATTGCGAGAGTGATCTCATACGTTGCGAACGAGTTCATA  159

Query  61   GTTAACGGTTTGGCAAACAGTCATGCTTTCCAGAGATTTGCTGTGAGGACTTCTAAGAGA  120
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  160  GTTAATGGTTTGGCAAACAGCCATGCTTTCCAGAGATTTGCTGTGAGGACTTCAAAGAGA  219

Query  121  ATAGAAAACCTCTCTAAAATGGCTGCAGAGAACAGGGAGAAAGTCGCTCAGCATATGGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  220  ATAGAAAACCTCTCTAAAATGGCTGCAGAGAACAGGGAGAAAGTCGCTCAGCAAATGGAA  279

Query  181  GAATTTTCCAAGAACATTGACTCGATGAAGAAACCCTGA  219
            |||||| |||||||||||||||| | |||||||||||||
Sbjct  280  GAATTTGCCAAGAACATTGACTCCACGAAGAAACCCTGA  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9802211055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5