BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892269
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03560.2 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1081 0.0
> AT5G03560.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:901323-902748 REVERSE LENGTH=1250
Length=1250
Score = 1081 bits (585), Expect = 0.0
Identities = 692/742 (93%), Gaps = 14/742 (2%)
Strand=Plus/Plus
Query 290 GAGGTTTTGCAAGGCAATTCAGTTCAGAGACTAAGCGAGTTAACACCAAAGTCAATTTCT 349
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GAGTTTTTGCAAGGCAATTCAGTTCAGAGACTAAGCGAGTTAACACCAAAGTCAATTTCT 441
Query 350 CTCTGTCTGATGATGATTCAGATGAGGAAACT----C-C-GGTTACTGAAGATTC-TGGC 402
|||||||||||||||||||||||||||||||| | | ||||||||||||||| |
Sbjct 442 CTCTGTCTGATGATGATTCAGATGAGGAAACTGAAACTCAGGTTACTGAAGATTCAAAG- 500
Query 403 AAGCCGGAG-TTCCTGCCTCCTCCTTATGACCCTTTCAGCAAGAAACCGGCGATTGAGGA 461
|||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 501 AAGCAGGAGCCTCC-ACCTCCTCCGTATGACCCTTTCAGCAAGAAACCGGCGATTGAGGA 559
Query 462 ACCAGAGGATCCTAAGAATCTTCAAGAAATATTCCATAAGATGAAAACAGAGGGTTTTA- 520
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct 560 ACCAGAGGATCCTAAGAATCTCCAAGAAATATTCCACAAGATGAGAACAGAGGGTTTTAC 619
Query 521 TGAATGAAGCTGTGAAAATGTTCGATGCGTTGTCTAAAGACGGCCGCACACATGAGGCGC 580
| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 620 T-AATGAAGCTGTGAAAATGTTTGATGCGTTGTCTAAAGATGGCCGCACACATGAGGCGT 678
Query 581 TAGAGCTCTTCTCTCAGATTAAAGATAAAAATCAAATGCCAGACGTGGTGGCTCATACTG 640
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 679 TAGAGCTCTTCTCTCAGATTAAAGATAAGAATCGAATGCCAGACGTGGTGGCTCATACTG 738
Query 641 CTATCGTTGAGGCGTATGCTAATGCAGGCCAGGCCAAAGAGACTCTCAAGGTTTTCATGC 700
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 739 CTATTGTTGAGGCCTATGCTAATGCAGGCCAGGCCAAGGAGACTCTCAAGGTTTTCATGC 798
Query 701 GTATGCTTGCCTGTGGTGTTTCGCCTAATGCGTATACATATACTGTTTTGATCAAAGGGC 760
||||||| ||| ||||||||||||||||||| ||||| ||| | ||||||||||||||||
Sbjct 799 GTATGCTCGCCAGTGGTGTTTCGCCTAATGCCTATACGTATTCAGTTTTGATCAAAGGGC 858
Query 761 TTGCAGCGGATGGTAGAACGCTTAAGGATGCGAAGAAGTACGTGTTAGAAATGATGGGAA 820
||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||||||||
Sbjct 859 TTGCAGCGGATGGTAAAACACATAAGGATGCGAAGAAGTACTTGTTGGAAATGATGGGAA 918
Query 821 ATGGCATGAGCCCTAATGCTGCCACTTACACTTCAGTGTTTGAAGCTTTTGTAAAAGAGG 880
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 919 ATGGCATGAGCCCTAATGCTGCCACTTACACTGCAGTGTTTGAAGCTTTTGTAAGAGAGG 978
Query 881 AAAAAGAGGAATCAGCTAGAGAATTGTTGCAAGAAATGAAGGGAAAGGGGTTTATGCCTG 940
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 979 GAAAAGAAGAATCAGCTAGAGAATTGTTGCAAGAAATGAAGGGAAAGGGTTTTGTGCCTG 1038
Query 941 ATGAGAAAGCTGTGAGAGAGGCTCTTC-AATCTAAAAGAGGCCAAGTCTTTAGGACTGTC 999
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 1039 ATGAGAAAGCTGTGAGAGAGGCTCT-CGAATATAAAAGAGGCCAAGTCTTTAGGACTGTC 1097
Query 1000 ATCAACCTTTTATTTGATAAGT 1021
||||||||||||||||||||||
Sbjct 1098 ATCAACCTTTTATTTGATAAGT 1119
Score = 361 bits (195), Expect = 1e-98
Identities = 233/251 (93%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 42 ATCCCGT-GGAAATCGCTGCTTAGCGTCAGTTATCACTTCATCTGCGATTAACGGCGGTG 100
||||| | |||||||||| || ||| |||| ||||||||||||||||||||||||||| |
Sbjct 89 ATCCC-TCGGAAATCGCTTCTCAGCCTCAGATATCACTTCATCTGCGATTAACGGCGGCG 147
Query 101 AGTTTTCTGATTTCCG-TAGAGCTTTCGCCTTTTATTCGTCTTCGTCTTCTTGGTGGTCG 159
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 148 AGTTTTCTGATTT-CGTTAGAGCTTTCGCCTTTTATTCGTCTTCGTCCTCTTGGTGGTCG 206
Query 160 TCTCCCGATGATTTGACGGCGGGATCGAAGAGGAGAGAGAAGAATACTACAGACCGTTTC 219
||||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||
Sbjct 207 TCTCCCGATGATTTGACGGCGTCATCGAAGAGGAAAGAGAAGAAGACTACAGAGCGTTTC 266
Query 220 TCTGCCGTGATTGACGCAGTCCATGACCGGAAACTCCCGCCGGAGTTGCGTGGACGGCGC 279
||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 267 TCTGCCGTGATTGACGCAGTCCATGACCGGAAACTCCCGCCGGAGCTACGTGGGCGGCGC 326
Query 280 GATTTCGTAAG 290
|||||||||||
Sbjct 327 GATTTCGTAAG 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5