BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892891 Length=1095 Score E Sequences producing significant alignments: (Bits) Value AT5G09850.1 | Symbols: | Transcription elongation factor (TFII... 1543 0.0 > AT5G09850.1 | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:3063251-3065889 REVERSE LENGTH=1967 Length=1967 Score = 1543 bits (835), Expect = 0.0 Identities = 1017/1098 (93%), Gaps = 39/1098 (4%) Strand=Plus/Plus Query 1 ATGGATTTGGACGATTTCCGATCGGTTATGGATAACGCAGGTGTTGATGTTTGGACATTT 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 ATGGATTTGGATGATTTCCGATCGGTTATGGATAACGCAGGTGTTGATGTTTGGACATTT 728 Query 61 ATCGATACGGCGATTCTCGTTGCGTCTCTTGACTATGGTCAAGAGCTCAAGCGTCGGAGA 120 ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||| Sbjct 729 ATCGATACGGCGATTCTTGTTGCGTCTCTTGACTATGGTCAAGAACTGAAACGTCGGAGA 788 Query 121 GATAACATCGTCGAGCGTCTCTACGCTACGTCCATGGCTAACAAGTGTAGAAACTGCGAT 180 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 789 GATAACATCGTCGAGCGTCTCTACGCTACGTCGATGGCTAACAAGTGTAGAAACTGCGAT 848 Query 181 TTTGGCGGCGGAGGTAGCGTTACGGAGGCGGCGGTTGGTAGGG-T--TAATGGGAGGGTT 237 ||||||||||| |||| |||||||||||||||| ||||||||| | ||||||||||||| Sbjct 849 TTTGGCGGCGGTGGTAACGTTACGGAGGCGGCGATTGGTAGGGTTAATAATGGGAGGGTT 908 Query 238 CACGAGGAGACGGAGGAGGAAGATGAAGAAGCTGCAGGagcagcagcagcagcagAAGAA 297 ||||||||||||||||||||||||||||||| | || | |||||||||||| ||||||| Sbjct 909 CACGAGGAGACGGAGGAGGAAGATGAAGAAG--G-AGTAACAGCAGCAGCAGAAGAAGAA 965 Query 298 GTAAGAGAGAAATCTGTTAATGTTGAAGACGATGACGATTTCGATCCCTTTGCTGGTTTG 357 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 966 GTTAGAGAGAAATCTGTTAATGTTGAAGACGATGACGATTTCGATCCCTTTGCTGGTTTG 1025 Query 358 TTTGATGATGAGCAGAAGAGTATTCTTGAAATCAAGGAGAAACTTGAAGATCCTGATCTG 417 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1026 TTTGATGATGAGCAGAAGAGTATTGTTGAAATCAAGGAGAAACTTGAAGATCCTGATCTG 1085 Query 418 TCTGAAGAATCTTTAGTTGAGTTGCTTCAGAATCTGGAAGATATGGACATAACATTCCAA 477 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1086 TCTGAAGAATCTTTGGTTGAGTTGCTTCAGAATCTGGAAGATATGGATATAACATTCCAA 1145 Query 478 GCTCTTCAGGAAACTGATATTGGGAGGCATGTGAATAGAGTTCGGAAGCATCCATCTAAC 537 |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| Sbjct 1146 GCTCTTCAGGAAACTGATATTGGGAGGCATGTGAATCGAGTTCGGAAGCATCCTTCGAAC 1205 Query 538 AATGTTCGAAGATTAGCTAAACAGCTTGTCAAAAAATGGAAGGAAACAGTTGACGAATGG 597 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1206 AATGTTCGAAGATTAGCTAAACAGCTTGTCAAAAAATGGAAGGAAACAGTAGATGAATGG 1265 Query 598 GTCAAATTTAACCAGCCTGGTGATCTTGAACCTCCGAGTTTGATAGAACAATCAATCTCT 657 ||||||||||||||||||||||||||||||||||| |||||||||| | | || Sbjct 1266 GTCAAATTTAACCAGCCTGGTGATCTTGAACCTCCAAGTTTGATAG--C---CGAT---- 1316 Query 658 TCCAATGTAGCCGATGAGGATTCACCGGTGCAGAAAGCTCTCCATAACGGTAATCGCCAA 717 | || ||| | ||||||||||||||||||| ||||| |||| ||||||| Sbjct 1317 ------G-AG--GAT-----T-CACCGGTGCAGAAAGCTCTTCATAATGGTAGTCGCCAA 1361 Query 718 CAGGTGCCTGATTTCGGATATTCACCGGTTCCTCAGAATGGGTATTCCAGTTCAAGCAAG 777 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 CAGGTCCCTGATTTCGGATATTCACCGGTTCCTCAGAATGGGTATTCCAGTTCAAGCAAG 1421 Query 778 AACAGTTACATTTCCGAGCCAGAGAGAAAACCAAGACCTGTTACTGCTGCTGCTCCTCCA 837 |||||| ||||| | |||||||| |||||||||||||||||| ||| | ||| | Sbjct 1422 AACAGTAACATTACTGAGCCAGAAAGAAAACCAAGACCTGTT---GCT-C--CTCA---A 1472 Query 838 CCTAGGAGAGAATCTCCTTCTCCGGCTAAACCTTCTCGCCCTTCTCCTTCTCAACAAACC 897 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1473 CCTAGGAGAGAATCTCCTTCTCCAGCAAAACCTTCTCGCCCTTCTCCTTCTCAACAAACC 1532 Query 898 ATTCCGAGGGACAAGGAGCATAAGGAAGTTGATTTCGACACAGCCCGGAAAAGGCTACAA 957 |||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| Sbjct 1533 ATTCCGAGGGACAAAGAGCATAAAGAAGTTGATTTCGACACGGCCAGGAAAAGGCTACAA 1592 Query 958 CAAAACTACAGACAAGCCGAGAATGCAAAAAAGCAAAGGACTATACAAGTGATGGACATT 1017 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1593 CAAAACTACAGACAAGCCGAGAATGCAAAAAAGCAAAGGACTATACAGGTGATGGACATT 1652 Query 1018 CATGAGATCCCTAAACCTAAGAAAGGTGGATTTTTCCCAAGAAAAGGCGGTAGTTCTCAA 1077 ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1653 CATGACATTCCTAAACCTAAGAAAGGTGGATTTTTCCCAAGAAAAGGCGGGAGTTCTCAA 1712 Query 1078 GGTGGTAGACACTGGTAA 1095 |||||||||||||||||| Sbjct 1713 GGTGGTAGACACTGGTAA 1730 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53664382605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5