BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892895 Length=1563 Score E Sequences producing significant alignments: (Bits) Value AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:3081... 2296 0.0 > AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:3081442-3085264 REVERSE LENGTH=1873 Length=1873 Score = 2296 bits (1243), Expect = 0.0 Identities = 1477/1587 (93%), Gaps = 27/1587 (2%) Strand=Plus/Plus Query 1 ATGGATTTTGACGAGTACGAGTACCTTGAGAAGACGGTGGAGGAAGGAGATGGGTCAAAT 60 ||||| |||||||| ||||||||||| ||||||||||| |||||||||| |||||| ||| Sbjct 86 ATGGAGTTTGACGAATACGAGTACCTGGAGAAGACGGTTGAGGAAGGAGCTGGGTCGAAT 145 Query 61 Aagaacaaggaatcgagtgggaacgagaagagcgagaggagttacagaaagagagaagga 120 ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 146 AAGAAAAAGGAAGAGAGTGGGAACGAGAGGAGCGAGAGGAGTTACAGAAAGAGAGAAGGA 205 Query 121 ggagagaggcatgaggaagaaggCGGTGACGAAGAGCGAGG-TAGCAGTCGGAGTAAGAA 179 ||||||||||| | ||||||||| ||||| |||||||| || |||||||||||||||||| Sbjct 206 GGAGAGAGGCAGGGGGAAGAAGGAGGTGAAGAAGAGCG-GGTTAGCAGTCGGAGTAAGAA 264 Query 180 GTCTCGCGgagacggtgaagagaac------ggt-------a-----agagagagaggca 221 ||||||||||||||| ||||||||| ||| | ||||||||||||| Sbjct 265 GTCTCGCGGAGACGGCGAAGAGAACGGTGGTGGTAAGAGGGATCGGGAGAGAGAGAGGCA 324 Query 222 taggagcagcagagataaggatcgagagagggataaggttagagaaggatcgagagataa 281 ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| Sbjct 325 TAGGAGCAGCAGAGACAAGGATAGGGAGAGGGATAAGGTTAGAGAAGGATCGAGAGATAA 384 Query 282 agagagcgatcgggagaggagtagcaaggagagagataggagcgatagggacaaaccccg 341 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 385 AGAGAGCGATCGAGAGAGGAGTAGCAAGGAGAGAGATAGGAGCGATAGAGACAAACCCCG 444 Query 342 agacagagagagaagagagagggagaggaggagcagcagtagatctcggagggaggagag 401 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 445 AGACAGAGAGAGAAGAGAGAGGGAGAAGAGGAGCAGCAGTAGATCTCGGAGGGAAGAGAA 504 Query 402 ggaACGTGAAGTAGTGGAAAGAGGAAGCAGGAGACACAAGGACAAGAAAGATGAGCCTGA 461 ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 505 GGAACCCGAAGTAGTGGAAAGAGGAAGCAGAAGACACAGGGACAAGAAAGATGAGCCTGA 564 Query 462 AGCAGATCCAGAGAGAGATCAAAGAACCGTTTTTGCATATCAGATGCCTCTTAAAGCTAC 521 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 565 AGCAGATCCAGAGAGAGATCAAAGAACTGTTTTTGCATATCAGATGCCTCTTAAAGCTAC 624 Query 522 CGAGAGAGATGTTTATGAGTTCTTCTCCAAAGCGGGCAAGGTGAGGGACGTGCGATTGAT 581 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 625 GGAGAGAGATGTTTATGAGTTCTTCTCCAAAGCGGGCAAGGTGAGGGATGTGCGATTGAT 684 Query 582 CATGGACAGAAATTCAAGACGATCAAAGGGAGTCGGGTATATTGAGTTTTATGATGTGAT 641 ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 685 CATGGACAGAAATTCAAGACGATCAAAAGGCGTCGGGTATATTGAGTTTTATGACGTGAT 744 Query 642 GTCAGTTCCAATGGCCATAGCTCTGTCTGGACAACCGTTTCTTGGACAACCTGTGATGGT 701 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 745 GTCAGTTCCAATGGCCATAGCTCTGTCTGGACAACTGTTTCTTGGACAACCTGTGATGGT 804 Query 702 TAAGCCCTCTGAAGCTGAAAAGAATTTGGCTCAATCT-A-A-CACTACACCAGGTGGTAC 758 ||||||||||||||||||||||||| |||| |||||| | | |||||| |||||||| Sbjct 805 TAAGCCCTCTGAAGCTGAAAAGAATCTGGCCCAATCTAACAGCACTACGGTTGGTGGTAC 864 Query 759 TGGCCCTGTAGATAGGAAACTTTATGTGGGAAATTTGCATTTCAACATGACAGAATTACA 818 ||||||| |||||||||||| |||||||| || |||||||||||||| | ||| | || Sbjct 865 AGGCCCTGCAGATAGGAAACTCTATGTGGGTAACCTGCATTTCAACATGTCGGAACTGCA 924 Query 819 GCTTAGACAGATTTTTGAGGCATTTGGTCCCGTTGAGCTTGTTCAGCTACCACTTGATCC 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 GCTTAGACAGATTTTTGAGGCATTTGGTCCCGTTGAGCTTGTTCAGCTACCACTTGATCC 984 Query 879 TGAGACTGGGCAGTGCAAAGGTTTTGGATTTATTCAGTTTGCTCAACTTGAACATTCAAA 938 ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 985 TGAAACTGGGCAGTGCAAAGGATTTGGATTTATTCAGTTTGTTCAACTTGAACATTCAAA 1044 Query 939 GGCAGCACAAATTTCCTTAAATGGGAAGCTGGAGATTGCTGGTAGGACAATCAAGGTTTC 998 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1045 GGCAGCACAAATTGCCTTAAATGGAAAGCTGGAGATTGCTGGTAGGACAATCAAGGTTTC 1104 Query 999 CTCTGTCTCTGATCATATTGGTACACAAGATGCTGCTCCAAAATCTGCTGATTTTGATGA 1058 || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1105 TTCCGTCTCTGATCATATTGGTACACAAGATTCTGCTCCAAAATCTGCTGATTTTGATGA 1164 Query 1059 TGATGATGGAGGTGGACTGGCTTTAAATGCACAATCTAGGGCTCTGCTTATGCAGAAGCT 1118 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1165 TGATGATGGAGGTGGACTGGCTTTAAATGCACAATCTAGGGCTATGCTTATGCAGAAGCT 1224 Query 1119 GGATCGTTCAGGTATCGCGACGAGCATTGTGGGGTCTCTTGGAGTACCAGGGCTAAATGG 1178 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 1225 GGATCGTTCAGGTATCGCTACAAGCATTGTGGGCTCTCTTGGAGTACCAGGGCTAAATGG 1284 Query 1179 AGCAACCTTTAATCAACCAGGCATAAATCCTAGTTTCCCAACACCAGTGCTTCCGACAAC 1238 |||| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 1285 AGCAGCGTTTAATCAACCAGGCATGAATCCTAGTTTCCCAACATCAGTGCTTCCGACAAC 1344 Query 1239 AGCAATCCCTTCTTTGGTCAATGAACCTGTTGGTCAGCCAAGTGAATGCCTTTTATTGAA 1298 ||||||||||||||| |||||||||| |||||||| |||||| ||||||||| ||||||| Sbjct 1345 AGCAATCCCTTCTTTTGTCAATGAACATGTTGGTCTGCCAAGCGAATGCCTTCTATTGAA 1404 Query 1299 AAACATGTTTGATCCTGCAACCGAGACGGAACGCGA-CTTTGA-CTTTGAAATCAGAGAA 1356 || |||||||||||||||||||||||||||| | | |||||| ||| ||||||||||| Sbjct 1405 GAATATGTTTGATCCTGCAACCGAGACGGAAC-CAAACTTTGATCTT-GAAATCAGAGAC 1462 Query 1357 GACGTTGAGGATGAATGTTCAAAGTATGGCGAAGTCAATCATATATACGTAGACAAGAAC 1416 ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 1463 GACGTTGCGGATGAATGTTCAAAGTATGGCCCAGTCAACCATATATACGTAGACAAGAAC 1522 Query 1417 AGTGCGGGGTTTGTGTATCTGAGGTTTCAATCAGTGGAGGCGGCAGTAGCAGCTCAAAGA 1476 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 1523 AGTGCGGGGTTTGTGTATCTGAGGTTTCAATCAGTGGAGGCAGCAGCAGCAGCTCAAAGA 1582 Query 1477 GCAATGCACATGAGATGGTTTGCACAAAAGATGATATCTGCAACTTTCATGCCTCCTCAT 1536 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1583 GCAATGCATATGAGATGGTTTGCACAAAAGATGATATCTGCAACTTTCATGCCTCCTCAT 1642 Query 1537 GAATATGCAGCCAAAGCCAAGGCCTGA 1563 ||||||| ||||||||||||||||||| Sbjct 1643 GAATATGAAGCCAAAGCCAAGGCCTGA 1669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77158237665 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5