BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892936
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10250.1 | Symbols: DOT3 | Phototropic-responsive NPH3 famil... 1129 0.0
> AT5G10250.1 | Symbols: DOT3 | Phototropic-responsive NPH3 family
protein | chr5:3217028-3219368 REVERSE LENGTH=1824
Length=1824
Score = 1129 bits (611), Expect = 0.0
Identities = 713/762 (94%), Gaps = 8/762 (1%)
Strand=Plus/Plus
Query 49 GATGCTGATCCAATATGTAACAAAAGCATTATATTTCCAAATAGAGTTGTTGCATTAGCT 108
||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 43 GATGCTGGTCCAGTATGTAACAAAAGCATTATATTTCCAAGTAGAGTTGTTACATTAGCT 102
Query 109 AACAGATTCGAGAAGAAAGA-----CC--GTATGTCAAATCTCAAATCCCTACTGATCTG 161
||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 103 AACAGCTTCGAGAAGAAAGACCGTTCCTGGTATGTCAAATCTCAAATCCCTACTGATCTG 162
Query 162 TCTATTCAAGTCGACGACATTACCTTTAAAAGCACACAAGTTTCCTTTGATCTCCAAATG 221
|||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 163 TCTATTCAAGTCAACGATATTACC-TTCAAAGCACACAAGTTTCCTTTGATCTCCAAATG 221
Query 222 TGGTTACATGAGCTCTATTGAGCTAAAACCTTCAACTTCTGAGAATGGATATCATCTCAA 281
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TGGTTACATAAGCTCTATTGAGCTAAAACCTTCAACTTCTGAGAATGGATATCATCTCAA 281
Query 282 GCTGGAAAACTTCCCAGGTGGAGCAGATACATTTGAGACCGTTCTGAAATTTTGCTACAA 341
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 282 GCTGGAAAACTTCCCAGGTGGAGCAGATACATTCGAGACCATTCTGAAATTTTGCTACAA 341
Query 342 TCTCCCACTGGACTTGAGTCCTCTCAATGTAGCTCCACTAAGATGTGCATCAGAATACTT 401
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 342 TCTCCCACTGGACTTGAATCCTCTCAATGTAGCTCCACTGAGGTGTGCATCAGAATACTT 401
Query 402 GTACATGACTGAAGAATTTGAAGCCGGGAATTTAATATCCAAGACAGAAGCTTTCATCAC 461
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 402 GTACATGACTGAAGAGTTTGAAGCCGGGAATTTAATCTCCAAGACAGAAGCTTTCATCAC 461
Query 462 TTTTGTAGTACTTTCCTCATGGAGAGATACATTCACTGTTCTGAGATCCTGTGCAAACTT 521
||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 462 TTTTGTAGTACTTGCCTCATGGAGAGATACACTCACTGTTCTGAGATCCTGCACAAACTT 521
Query 522 ATCTCCATGGGTCGAAAACCTGCAAATCGTAAGGAGATGTTGTGACTTGCTTGCTTGGAA 581
|||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 522 ATCTCCGTGGGCCGAAAACCTCCAAATCGTAAGGAGATGCTGTGACTTGCTTGCTTGGAA 581
Query 582 AGCCTGCAATGATAACAACAAACCAGAAGATGTTGTAGATAGCAATGACAGATGTTTATA 641
|||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||
Sbjct 582 AGCCTGCAATGATAACAACATACCAGAAGATGTTGTAGATAGAAATGAAAGATGCTTATA 641
Query 642 CAGTGACGTAGCCACCCTTGGCATTGATCACTTCATGAGGGTTATAACAACTATGAAAGC 701
|| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAATGACATAGCCACCCTTGACATTGATCACTTCATGAGGGTTATAACAACTATGAAAGC 701
Query 702 AAGACGTGCCAAGCCGGAGATTACAGGTAAGATCATCATGAAATATGCAGAGAACTTTTT 761
||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 702 AAGACGTGCCAAGCCACAGATTACAGGTAAAATCATCATGAAGTATGCAGATAACTTTTT 761
Query 762 GCCGATAATCGATGACGATTTGGAAGGAATAAGAGGTTACGG 803
|||| ||||| |||| ||||||||||| |||| |||||||||
Sbjct 762 GCCGGTAATCAATGATGATTTGGAAGGTATAAAAGGTTACGG 803
Score = 998 bits (540), Expect = 0.0
Identities = 604/634 (95%), Gaps = 7/634 (1%)
Strand=Plus/Plus
Query 803 GAGAAAGAATGGAGGAAAGCAGCAGTTTAGGATGTCAAGAACATAAAGAAACTATTGAAA 862
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGGAAGAATGGAGGAAAGCAACAGTTTAGGATGTCAAGAACATAAAGAAACTATTGAAA 898
Query 863 GCTTAGTCAGTGTACTTCCTCCACAATCTGGAGCAGTCTCATGCCACTTTCTCTTAAGGA 922
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 899 GTTTAGTCAGTGTACTTCCTCCACAATCGGGAGCAGTCTCATGTCACTTTCTCTTAAGGA 958
Query 923 TGCTGAAAACAGCAATTGTTTACTCTGCATCTCCAGCTTTAATATCTGATCTTGAGAAAC 982
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 TGCTGAAAACATCAATTGTTTACTCTGCATCACCAGCTTTAATATCTGATCTTGAGAAAC 1018
Query 983 GGGTCGGCATGGCTTTGGAAGATGCTAATGTATGTGACCTCCTGATTCCTAACTTCAAAA 1042
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 GGGTCGGCATGGCTTTGGAAGATGCTAATGTATGTGACCTCCTAATTCCTAACTTCAAAA 1078
Query 1043 ATGAAGATCAGCA-GAAAGGAG-CAAGGATTTTCGAGTATTTCTTGATGCATGAGCAACA 1100
||||||| ||||| ||||| || || ||||||| |||| |||||||||||||||||||||
Sbjct 1079 ATGAAGAACAGCAAGAAAG-AGTCA-GGATTTTTGAGTTTTTCTTGATGCATGAGCAACA 1136
Query 1101 ACAAGTACTAGGAAAGCCAAGCATAACCAAGCTCTTGGACAATTATTTAGCCGAGATTGC 1160
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1137 ACAAGTTCTAGGAAAGCCAAGCATATCCAAGCTCTTGGACAATTATTTAGCCGAGATTGC 1196
Query 1161 AAAAGATCCATGTCTACCCATCACAAAGTTTCAGGTTCTAGCAGAAATGTTGCCGGAAAA 1220
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAAAGATCCATATCTTCCCATCACAAAGTTTCAGGTTCTAGCAGAAATGTTGCCGGAAAA 1256
Query 1221 TGCTTGGAAATGCCATGACGGTCTCTATAGAGCAATTGATATGTTCCTCAAGGTAACTCA 1280
|||||||||||| ||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct 1257 TGCTTGGAAATGTCATGATGGTCTCTATAGAGCAATTGATATGTTTCTCAAG--A-CTCA 1313
Query 1281 TCCTTCACTATCAGAGCACGATAGAAGAAGATTATGCAAGACAATGAACTGTGAGAAACT 1340
||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1314 TCCTTCATTGTCAGATCACGATAGAAGAAGATTATGCAAAACAATGAACTGTGAGAAACT 1373
Query 1341 ATCACTTGATGCATGCCTACACGCTGCACAAAATGATCGGTTGCCTCTGAGAACTATCGT 1400
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1374 ATCACTTGATGCATGCCTACACGCTGCACAAAATGATCGGTTGCCTCTAAGAACTATCGT 1433
Query 1401 CCAGATCAATACTCAAGTGCTTTTCTCGGAACAA 1434
||||||||||||||||||||||||||||||||||
Sbjct 1434 CCAGATCAATACTCAAGTGCTTTTCTCGGAACAA 1467
Score = 442 bits (239), Expect = 6e-123
Identities = 296/323 (92%), Gaps = 5/323 (2%)
Strand=Plus/Plus
Query 1435 AGAAGAAGGAAGAAAATTCTGAAGGTCGTGAGGATAAACAAATGTCTAGAGATAATGAAA 1494
||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1505 AGAAGGAGGAAGAAAATTCTGGAGGTCGTGAGGATAAACGAATGTCTAGAGATAATGAAA 1564
Query 1495 TCAAGACATG-CACTTAAGGAAGAGCTGGAAAATGTGAAGAAGAAGATGGCAGAGCTTCA 1553
|| | || | |||||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 1565 TC-A-TCAAGACACTTAAGGAAGAGTTAGAAAATGTGAAGAAGAAGATGTCAGAGCTTCA 1622
Query 1554 GAACGATTACAATGAGCTTCAACAAGAGTATGAAAAGCTAAGTAGCAAACAGAAGAGCTC 1613
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1623 GAGCGATTACAATGAGCTTCAACAAGAGTATGAAAGGCTAAGTAGCAAACAGAAGAGCTC 1682
Query 1614 ACATAACTGGGGTTTGCGTTGGCAAAAGGTGAAGAAATCGTTCCAGATAAAACGCGAAGA 1673
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1683 ACATAACTGGGGATTGCGTTGGCAAAAGGTGAAGAAATCGTTCCAGACAAAACGAGAAGA 1742
Query 1674 AGACGAAACAAGAGACGGGG-CAAGAAGAAGAAGTTCCACGGGACCAAGAACCAGCCTCA 1732
|| ||||||||||| | || || ||||||||||||||||||||| |||||| || |||
Sbjct 1743 TGAGGAAACAAGAGA-GAGGACACGAAGAAGAAGTTCCACGGGACAAAGAACTAGTTTCA 1801
Query 1733 GGAGAAGAATGTCAATGTCATAA 1755
|||| ||||||||||||||||||
Sbjct 1802 GGAGGAGAATGTCAATGTCATAA 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5