BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893032 Length=564 Score E Sequences producing significant alignments: (Bits) Value AT5G11190.1 | Symbols: SHN3 | Integrase-type DNA-binding superf... 865 0.0 > AT5G11190.1 | Symbols: SHN3 | Integrase-type DNA-binding superfamily protein | chr5:3564976-3566051 FORWARD LENGTH=570 Length=570 Score = 865 bits (468), Expect = 0.0 Identities = 538/571 (94%), Gaps = 8/571 (1%) Strand=Plus/Plus Query 1 ATGGTACATTCGAGGAAGTTCCGAGGTGTCCGCCAGCGACAATGGGGTTCTTGGGTCTCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTACATTCGAGGAAGTTCCGAGGTGTCCGCCAGCGACAATGGGGTTCTTGGGTCTCT 60 Query 61 GAGATTCGTCATCCTCTATTGAAGAGAAGAGTGTGGCTTGGCACATTT-GAAACGGCAGA 119 |||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||| Sbjct 61 GAGATTCGCCATCCTCTATTGAAGAGAAGAGTGTGGCTTGGAAC-TTTCGAAACGGCAGA 119 Query 120 AGCGGCTGCAAGAGCTTACGACCAAGCGGCTCTTCTAATGAACGGTCAAAACGCTAAGAC 179 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 120 AGCGGCTGCAAGAGCATACGACCAAGCGGCTCTTCTAATGAACGGCCAAAACGCTAAGAC 179 Query 180 CAATTTCCCTGTCGTGAAATCAGAGGAAGGCTCCGATCACGTTAAAGACGTTAACTCTCC 239 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 180 CAATTTCCCTGTCGTAAAATCAGAGGAAGGCTCCGATCACGTTAAAGATGTTAACTCTCC 239 Query 240 GTTAATGTCACCAAAGTCGTTATCTGAGCTCTTGAACGCTAAGTTAAGGAAGAGCTGCAA 299 ||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| Sbjct 240 GTTGATGTCACCAAAGTCATTATCTGAGCTTTTGAACGCTAAGCTAAGGAAGAGCTGCAA 299 Query 300 AGACCTAACGCCGTCGCTGACGTGTCTTCGTCTTGATACCGATAGTTCCCACATTGGAGT 359 |||||||||||| || |||||||||| ||||||||||| || ||||||||||||||||| Sbjct 300 AGACCTAACGCCTTCTTTGACGTGTCTCCGTCTTGATACTGACAGTTCCCACATTGGAGT 359 Query 360 TTGGCAGAAACGGGCCGGGTCGAAAACAAGTCCGACTTGGGTCATGCGTCTCGAACTTGG 419 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 360 TTGGCAGAAACGGGCCGGGTCGAAAACAAGTCCGACTTGGGTCATGCGCCTCGAACTTGG 419 Query 420 GAACGTAGTCAACGAAAATGCGGTTGACTTAGGGTTGACTACGATGAAGAAACAAAACGT 479 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 420 GAACGTAGTCAACGAAAGTGCGGTTGACTTAGGGTTGACTACGATGAACAAACAAAACGT 479 Query 480 CGAGAAAGAAGAAGAACAAGAAG---CTATTA---GTGATGAGGATCAATTAGCCATGGA 533 ||||||||||||||| |||||| |||||| ||||||||||||| ||||| ||||| Sbjct 480 TGAGAAAGAAGAAGAAGAAGAAGAAGCTATTATTAGTGATGAGGATCAGTTAGCTATGGA 539 Query 534 GATGATCGAGGAATTGCTGAACTGGAGTTGA 564 |||||||||||| |||||||| ||||||||| Sbjct 540 GATGATCGAGGAGTTGCTGAATTGGAGTTGA 570 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27076205233 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5