BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893182 Length=813 Score E Sequences producing significant alignments: (Bits) Value AT5G12840.1 | Symbols: HAP2A, EMB2220, ATHAP2A, NF-YA1 | nuclea... 1230 0.0 > AT5G12840.1 | Symbols: HAP2A, EMB2220, ATHAP2A, NF-YA1 | nuclear factor Y, subunit A1 | chr5:4050840-4053534 REVERSE LENGTH=1275 Length=1275 Score = 1230 bits (666), Expect = 0.0 Identities = 772/822 (94%), Gaps = 12/822 (1%) Strand=Plus/Plus Query 1 ATGCAATCGAAACCGGGAAGAGAAAACGAAGAGGAAGTC---AATCACCATGCTGTTCAG 57 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 150 ATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAG 209 Query 58 CAACCGATGATGTATCCAGCAGATCCCTGGTGGAAAATCAACTCCTTTGGTGTAGTTCCT 117 || |||||||||||| ||||| ||||||||||||| ||||||||||||||| || ||| Sbjct 210 CAGCCGATGATGTAT---GCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCT 266 Query 118 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCGAATGGTTCC 177 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 267 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCC 326 Query 178 GAATCAAACGATGTTCATTCAGCATCTGAAGATGGTGCGTTGAATGGTGAAAATGACGGC 237 || ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct 327 GAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGC 386 Query 238 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCATGGAATGGAA 297 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 387 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAA 446 Query 298 GGGAATGACCCGGCACTTTCTATTCGTAATATGCATGATCAGCAACTTGTACAACCACCA 357 || |||||||| || || ||||| ||||| ||||||||||||| |||||||||||||||| Sbjct 447 GGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCA 506 Query 358 GAGCTTGTTGGACATTATATCGCTTGTGTCCCAAATCCATATCAGGATCCATATTATGGC 417 |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 507 GAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGG 566 Query 418 GGAATGATGGGAGCATATGGTCATCAGCCATTGGGTTTTCGACCATATCTTGGAATGCCT 477 ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 567 GGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCT 626 Query 478 CGTGAAAGAACAGCTCTGCCACTTGACATGACACAAGAGCCCGTTTATGTGAATGCAAAA 537 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 627 CGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAG 686 Query 538 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGTTAGAAAGGAAA 597 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 687 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAA 746 Query 598 GTCATCAGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCGATGAGAAGG 657 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 747 GTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGG 806 Query 658 GCACGAGCTAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTGGAAGCAGGAGAGGGTGCA 717 |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct 807 GCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCA 866 Query 718 GGA---AG-GA--GAGAAAGGGGTTCAGCAACGAACTCATCAGGCTCTGAACAAGTTGAG 771 ||| || || ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 867 GGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAG 926 Query 772 ACAGACTCTAATGAGACCCTGAATTCGTCAGGTGCACCATAA 813 |||||||||||||||||||||||||| || |||||||||||| Sbjct 927 ACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAA 968 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39584507836 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5