BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893435 Length=2058 Score E Sequences producing significant alignments: (Bits) Value AT5G15250.2 | Symbols: FTSH6 | FTSH protease 6 | chr5:4950359-4... 1825 0.0 > AT5G15250.2 | Symbols: FTSH6 | FTSH protease 6 | chr5:4950359-4952803 REVERSE LENGTH=2214 Length=2214 Score = 1825 bits (988), Expect = 0.0 Identities = 1115/1177 (95%), Gaps = 5/1177 (0%) Strand=Plus/Plus Query 1 ATGAAAATGGCATCATCATCATCAGCTTTGTCTCTCCCTCTCTCCAACATCCCAACCTGT 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 27 ATGAAAATGGCATCATCATCATCAGCTTTGTCTTTCCCTCTCTCCAACATCCCAACCTGT 86 Query 61 AATAAGAAGTCCCAAGAGTTTCAAAAACCGGCTCCTTTATCCAAATCCAGTCACACACAT 120 | ||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||| Sbjct 87 AGTAAGAAGTCTCAACAATTTCAAAAACCGGCTTCTTTATCCAAATCCAGTCACACACAT 146 Query 121 AAACCTAGTCTTAAAACCCAAACTTTACACCACAAACTCACTAAGAGAAATTTACTGAGT 180 ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 147 AAACCTAGTCTCAAAACCCAAATTTTACACCACAAATTCACTAAGAGAAATTTACTGAGT 206 Query 181 TT---GACTGCCTTGGGATTTACGTCATCTCTAGGAACTTTTCTTGCTCACCCCGCAAGA 237 || |||||||||||||||||||||| | ||||||||| |||||||||||||||||| | Sbjct 207 TTGACGACTGCCTTGGGATTTACGTCAGCGCTAGGAACTGTTCTTGCTCACCCCGCAAAA 266 Query 238 GCTGAACCAGAAGCTCCCATCGAAGCCACTTCCAATAGAATGTCGTACTCGAGATTCCTG 297 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 267 GCTGAACCAGAAGCTCCCATCGAAGCCACTTCCAATAGAATGTCGTATTCGAGATTCCTG 326 Query 298 CAGCATCTGAAAGAGAATGAAGTGAAGAAAGTTGACTTGATCGAGAACGGAACCGTTGCG 357 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 327 CAGCATCTGAAAGAGAATGAAGTGAAGAAAGTTGACTTGATCGAGAACGGAACGGTTGCG 386 Query 358 ATCGCAGAGATCTCTATTCCAGCATTAGGAAAGATCCAGAGGGTTAGGGTTAACCTTCCC 417 |||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 387 ATCGTAGAGATCTCTAATCCAGTAGTAGGAAAGATCCAGAGGGTTAGGGTTAACCTTCCC 446 Query 418 GGTTTACCGGTTGATCTGGTGAGGGAGATGAAGGAGAAGAACGTCGATTTCGCTGCTCAT 477 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 447 GGTTTACCAGTCGATCTGGTGAGGGAGATGAAGGAGAAGAACGTCGATTTCGCTGCTCAT 506 Query 478 CCCATGGATGTGAATTGGGGAGCTTTCTTGCTCAACTTCTTGGGAAATTTAGGGTTTCCT 537 |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 507 CCCATGAATGTGAACTGGGGAGCTTTCTTGCTCAACTTCTTGGGGAATTTAGGGTTTCCT 566 Query 538 TTGATCTTACTTGGCTCTCTGCTTTTAACATCTTCTTCAAGAAAAAATCCTGGTGGACCC 597 |||||||| |||| ||||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 567 TTGATCTTGCTTGTCTCTCTGCTTTTAACATCTTCTTCAAGAAGAAACCCTGCTGGACCT 626 Query 598 AACTTGCCTTTTGGTCTTGGAAGAAGCAAAGCTAAGTTTCAGATGGAGCCTAACACAGGG 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 627 AACTTGCCTTTTGGTCTTGGAAGAAGCAAAGCTAAGTTTCAGATGGAGCCTAACACAGGG 686 Query 658 ATAACGTTCGACGATGTAGCAGGAGTAGACGAAGCCAAGCAAGACTTCGAAGAGATCGTT 717 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 687 ATAACGTTCGAGGATGTAGCAGGAGTAGACGAAGCCAAGCAAGACTTTGAAGAGATCGTT 746 Query 718 GAATTCTTGAAAACCCCAGAGAAATTCTCAGCTTTGGGGGCTAAAATCCCAAAAGGCGTC 777 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 GAATTTTTGAAAACCCCAGAGAAATTCTCAGCTTTGGGGGCTAAAATCCCAAAAGGCGTC 806 Query 778 TTGTTGACTGGACCGCCGGGAACTGGAAAAACTCTCTTGGCCAAGGCTATAGCTGGAGAA 837 |||||||| |||||||| ||||| ||||| || |||||||||||||||||||| |||||| Sbjct 807 TTGTTGACCGGACCGCCAGGAACCGGAAAGACACTCTTGGCCAAGGCTATAGCCGGAGAA 866 Query 838 GCCGGTGTTCCGTTTTTCTCATTGTCCGGATCGGAGTTCATAGAGATGTTTGTTGGTGTA 897 ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 867 GCCGGTGTTCCTTTTTTTTCATTGTCTGGTTCGGAGTTCATAGAGATGTTTGTTGGTGTA 926 Query 898 GGAGCATCTAGGGTTAGAGACTTGTTCAACAAGGCAAAGGCTAATTCACCTTGTATAGTG 957 ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 927 GGAGCATCTAGAGCTAGAGACTTGTTTAACAAGGCAAAGGCTAATTCACCTTGTATAGTG 986 Query 958 TTCATTGATGAGATTGATGCTGTTGGGAGAATGAGAGGAACCGGTATAGGAGGAGGAAAC 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 987 TTCATTGATGAGATTGATGCTGTTGGGAGAATGAGAGGAACCGGTATAGGAGGAGGAAAC 1046 Query 1018 GACGAACGTGAGCAGACACTAAACCAGATTTTAACTGAAATGGACGGGTTTACGGGGAAT 1077 ||||||||||||||||| ||||||||||| ||||| |||||||| |||||| |||||||| Sbjct 1047 GACGAACGTGAGCAGACGCTAAACCAGATATTAACCGAAATGGATGGGTTTGCGGGGAAT 1106 Query 1078 ACCGGAGTGATTGTAATCGCTGCAACGAACCGGCCGGAAATTCTAGACTCTGCTTTGCTC 1137 |||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1107 ACCGGAGTAATTGTGATCGCTGCAACGAACCGGCCAGAGATTCTAGACTCTGCTTTGCTC 1166 Query 1138 CGACCAGGAAGATTCGACAGGCAGGTTTCCGTTGGTT 1174 ||||||||||||||||| |||||||| | ||||||| Sbjct 1167 CGACCAGGAAGATTCGATAGGCAGGTAT--GTTGGTT 1201 Score = 1352 bits (732), Expect = 0.0 Identities = 850/907 (94%), Gaps = 8/907 (1%) Strand=Plus/Plus Query 1159 CAGGTTTCCGTTGGTTTACCGGATATAAGAGGAAGAGAAGAGATATTAAAAGTTCACAGC 1218 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1257 CAGGTTTCTGTTGGTTTACCGGATATAAGAGGAAGAGAGGAGATATTAAAAGTTCACAGC 1316 Query 1219 AAAAGCAAGAAACTCGACAAAGATGTGTCTTTGAGCGTGATTGCCATGAGAACTCCAGGT 1278 | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1317 AGAAGCAAGAAACTCGACAAAGATGTATCTTTGAGCGTAATTGCCATGAGAACTCCAGGT 1376 Query 1279 TTCAGTGGAGCTGACTTGGCGAATCTTATGAACGAAGCCGCGATTCTCGCCGGAAGAAGA 1338 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1377 TTTAGTGGAGCTGACTTGGCCAATCTTATGAACGAAGCAGCGATTCTCGCCGGAAGAAGA 1436 Query 1339 GGAAAAGACAAGATTACCCTTACAGAGATTGACGACTCTATCGATCGAATTGTCGCCGGA 1398 ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct 1437 GGAAAAGACAAGATTACCCTTACAGAGATCGACGACTCTATCGATCGGATAGTCGCCGGA 1496 Query 1399 ATGGAAGGGACGAAGATGGTCGACGGTAAAAGCAAAGCGATTGTAGCGTATCATGAAGTA 1458 ||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1497 ATGGAAGGGACAAAGATGATCGACGGTAAAAGTAAAGCGATTGTAGCGTACCATGAAGTA 1556 Query 1459 GGACACGCAATTTGTGCGACTTTGACGGAGGGTCACGATCCGGTTCAGAAAGTTACGTTA 1518 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1557 GGACATGCAATTTGTGCGACTTTGACGGAGGGTCATGATCCGGTTCAGAAAGTTACGTTG 1616 Query 1519 GTTCCTAGAGGTCAAGCACGTGGTCTCACGTGGTTTTTGCCGGGAGAAGATCCGACTTTG 1578 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 1617 GTTCCTAGAGGTCAAGCACGTGGTCTCACGTGGTTCTTACCGGGAGAAGATCCGACATTG 1676 Query 1579 GTGTCTAAACAGCAATTGTTCGCTAGAATCGTCGGAGGACTCGGAGGCAGAGCCGCTGAA 1638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1677 GTGTCTAAACAGCAATTGTTCGCTAGAATCGTCGGAGGACTCGGAGGCAGAGCCGCCGAA 1736 Query 1639 GATGTAATTTTTGGAGAACCGGAGATAACCACCGGCGCCGCCGGTGATCTCCAGCAAGGC 1698 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1737 GATGTAATTTTTGGAGAACCGGAGATAACCACCGGCGCTGCCGGTGATCTCCAGCAAGTC 1796 Query 1699 ACTGAGACAGCAAGACAGATGGTGACGATGTTCGGCATGTCCGAGATTGGTCCGTGGGCA 1758 ||||||| |||||||||||||||||||||||| || ||||| || || ||||| |||||| Sbjct 1797 ACTGAGATAGCAAGACAGATGGTGACGATGTTTGGTATGTCGGAAATCGGTCCATGGGCA 1856 Query 1759 TTAACCGACCCAGCGGTTAAGCAAAACGACGTAGTTCTACGTATGTTAGCGAGGAACTCC 1818 |||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||| Sbjct 1857 CTAACCGACCCAGCGGTTAAGCAAAACGATGTGGTTCTACGGATGCTAGCGAGGAACTCA 1916 Query 1819 ATGTCCGAAAAACTCGCGGAAGAAATTGATTCTTGCGTGAAGAAAATAATCGGTGACGCT 1878 |||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1917 ATGTCCGAGAAACTTGCGGAGGATATTGATTCTTGCGTGAAGAAAATAATCGGTGACGCT 1976 Query 1879 TACGAGATTGC-AAAGAAGCACGTGAGGAATAACAGAGAAGCCATAGACAAGCTTGTTGA 1937 |||||| |||| ||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1977 TACGAGGTTGCGAAA-AAGCACGTGAGGAATAATAGAGAAGCTATAGACAAGCTTGTTGA 2035 Query 1938 TGTTTTGTTGGAGAAAGAAACCTTAACGGGAGACGAGTTCCGAGCAATTCTGTCTGAGTA 1997 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2036 TGTTTTGTTGGAGAAAGAAACCTTAACGGGAGACGAGTTTCGAGCAATTCTGTCTGAGTA 2095 Query 1998 TACTGATCAACCATTAAATACCGATG---AT--A-GAGTTCGAATCAAAGACTTGATTAG 2051 |||||||||||| ||||||||||||| || | || |||||||||| ||||||||||| Sbjct 2096 TACTGATCAACCGTTAAATACCGATGGCGATGTAAGAATTCGAATCAATGACTTGATTAG 2155 Query 2052 TGTTTAA 2058 ||| ||| Sbjct 2156 TGTCTAA 2162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102007507440 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5