BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893513 Length=1017 Score E Sequences producing significant alignments: (Bits) Value AT5G16030.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1343 0.0 > AT5G16030.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5238178-5240748 FORWARD LENGTH=1278 Length=1278 Score = 1343 bits (727), Expect = 0.0 Identities = 953/1054 (90%), Gaps = 47/1054 (4%) Strand=Plus/Plus Query 1 ATGGCTTTGCGAGGAGATGAGCCTGAGTTTATGAACCTAAGAGAATGGGATCGAAGAGCT 60 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 65 ATGGCTTTGCGAGGAGATGAGCATGAGTTTATGAACTTAAGAGAATGGGATCGAAGAGCT 124 Query 61 CGTTTAATCCGCGAAAACCCGACTTCAAGAAGATTCTCTGCTTCATACATTGGAAGCTTC 120 || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 125 CGATTAATCCGCGAAAACCCGAGTTCAAGAAGATTCTCAGCTTCATACATTGGAAGCTTC 184 Query 121 CGAGAAGATCATCACAAGTCTTCTTTTAG---AACAAACTTCAACAATATCTCTAGTACT 177 ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 185 CGAGAAGATCACCACAAGTCTTCTTTTAGAACAACAAACTTCAACAACATCTCTAGTACT 244 Query 178 GCCTCTTCTCCTGGCTACACTCTCAAAGAAGAGATTGACCCATCAACATATTCCTTCACC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 GCCTCTTCTCCTGGCTACACTCTCAAAGAAGAGATTGACCCATCAACATATTCCTTCACC 304 Query 238 AATGCACTTAAAGCATTACAAGCAAAGACAATGTACAATAACAGAGAATGGTTAGCACAA 297 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 305 AATGCACTCAAAGCATTACAAGCAAAGACAATGTACAATAACAGGGAATGGTTAGCACAA 364 Query 298 GAAGGGTTTGCATTGAATTCGAAGTGGAACGAAGCAGAGAAATATATCTGCAATCCATTG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GAAGGGTTTGCATTGAATTCGAAGTGGAACGAAGCAGAGAAATATATCTGCAATCCATTG 424 Query 358 TCTGGAGAAGTTCCAATGGAGTGTTTGTCTGCTAAAACATTAAGTGCAAGATCCTTCAGA 417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 TCTGGAGAAGTACCAATGGAGTGTTTGTCTGCTAAAACATTAAGTGCAAGATCCTTCAGA 484 Query 418 AACTTATCCACCATGTCTGCTCCTCTTCAACACTTCCCTAATCCCAATCCATTGATGAAT 477 |||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||||| Sbjct 485 AACTTATCAACCATGTCTGCTCCTCTTCA-C--TTCCCTAGTCCCAATCCATTGATGAAT 541 Query 478 AATATTGGTCAAAACAAACCAAATAATAATCCTAACGTTAGAGTTATTCACGAGGATCTT 537 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 542 AATATTGCTCAAAACAAACCAAATAATAATCCTAACGTTAGAGTCATTCACGAGGATCTT 601 Query 538 TATGCTCCTGATCCTGTACTTGTTGCTCGAGCAGAAA-A-GAAAGT-TGTG----G-GGA 589 |||||||||||||||| |||| |||||| || | || | | | ||| | ||| Sbjct 602 TATGCTCCTGATCCTGAACTTCTTGCTCTAGTA-AATTATGGGGGGGTGTTTTTAGCGGA 660 Query 590 TGAAGCGAGATGTGGGCAT-A--C-AGA-------ATAC-GA---CGTCG--G-TGGATC 631 ||| || |||||| || | | ||| |||| || || || | |||||| Sbjct 661 A-AAGAAAGTTGTGGGGATGAAGCGAGATGTGGGCATACAGAGTACGACGTCGGTGGATC 719 Query 632 TTAGCTCCGGTAGCCCTAGTCCGGCAAAGACGCCTCCGATTACGGAAAGGTCGTTGAAAC 691 |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| Sbjct 720 TTAGCTCCGGTAGCCCTAGTCCGGCAAAAACGCCTCCGATTATGGAAAGGTCGTTAAAAC 779 Query 692 GACACGTGGAAGCTGATGATTCGCCACTGGATTTCAATCTCAAACTGAAAGGTCAACAAG 751 ||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| Sbjct 780 GACACGTGGAAGCTGATGATTGGCCAGTGGATATCAATCTCAAAGTGAAAGGTCAACAAC 839 Query 752 AGGATGTGAAGTTGGgaa-agaaagaaaaagaagaagagaagcaagatatgagcaacgag 810 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 840 AGGATGTGAAGTTGG-AAGAGAAAGAAAAAGAAGAAGAGAAGCAAGATATGAGCAACGAA 898 Query 811 gaagaagaaggagaagaagaagtaga-a-g-aaga-a-gaga-aacaagat-attagtga 863 ||||| |||| ||||||||||| ||| | | |||| | ||| || ||||| || | || Sbjct 899 GAAGATGAAGAAGAAGAAGAAGAAGAGAAGCAAGATATGAGTGAAGAAGATGATAAA-GA 957 Query 864 agaagatgaagaaggggaacaacaagaagagaagaccaagaagaagaagagaggaaCTGG 923 |||||| || ||| || || |||||||||||||||||||||||||||||||| |||| Sbjct 958 AGAAGAAGACGAAC---AAGAAGAAGAAGAGAAGACCAAGAAGAAGAAGAGAGGACCTGG 1014 Query 924 ATGTTTCTCATGGGTGAGAACAAGACAAAGACAAGCAAGAAAATCAAAGTACATCTTCCC 983 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1015 ATGTTTCTCATGGGTGAGATCAAGACAAAGACAAGCAAGAAAATCAAAGTATATCTTCCC 1074 Query 984 TATTTGTGTTCCTCATCTTGTCAAAGGTTGTTGA 1017 |||||||||||||||||||||||||||||||||| Sbjct 1075 TATTTGTGTTCCTCATCTTGTCAAAGGTTGTTGA 1108 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49832273824 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5