BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893702
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17850.1 | Symbols: | Sodium/calcium exchanger family prote... 2067 0.0
> AT5G17850.1 | Symbols: | Sodium/calcium exchanger family protein
| chr5:5899253-5900932 FORWARD LENGTH=1680
Length=1680
Score = 2067 bits (1119), Expect = 0.0
Identities = 1256/1322 (95%), Gaps = 10/1322 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTTTTCATTTTCTTCAAACCGTTTTGGTTACTTGACAATCACATT-CTTCCTCGT 59
||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct 1 ATGGGATTTTCATTTTCTTCAAACCGTTTTGGTTACTTGACAGTCACATTCCTT-CTCGT 59
Query 60 TATCTCTTGTCTTCTGTTGGGTTTCTTCACCAATCCTGTTGATACAAGTGCCCTAAGACC 119
|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 60 TATCTCTTGTCTTCTGTTGGGTTTCTTCACGAATCCTGTTGATTCAAGTGCTCTAAGACC 119
Query 120 TAAATCCGAGCATGATTGTAGTGCCCTGAAGCACTTTCATGACTACAAATCAAAGTGTGC 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAAATCAGAGCATGATTGTAGTGCCCTGAAGCACTTTCATGACTACAAATCAAAGTGTGC 179
Query 180 TTACCTCAAATCAATTGATCCATGTGCTAGTCAAGGTTTCTTCGATTACCTCTCTTTCCT 239
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TTACCTGAAATCGATTGATCCATGTGCTAGTCAAGGTTTCTTCGATTACCTCTCTTTTCT 239
Query 240 CTATTGTAATTTCGAAGGATTCCCAATTTTGGGTCAGTTCCTTCTCTTCCTCTGGTTACT 299
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 240 CTACTGTAATTTCGAAGGTTTCCCAATTTTGGGTCAGTTTCTTCTCTTCCTCTGGTTGCT 299
Query 300 TCTCTTGTTCTATCTACTGGGTCACACAGCTTCTGAATA-TTTCTGTTCATCTCTTGAAA 358
|||||||||||||||| ||||||| || || ||||| || ||| ||||||||||||||||
Sbjct 300 TCTCTTGTTCTATCTATTGGGTCATACGGCCTCTGAGTACTTT-TGTTCATCTCTTGAAA 358
Query 359 GTCTCTCAAAGCTGCTTAATTTGTCACCAACTGTTGCTGGCGTGACTCTTTTATCGCTTG 418
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 359 GTCTCTCAAAGCTGCTTAATTTGTCACCAACTGTTGCTGGTGTTACTCTTTTGTCGCTTG 418
Query 419 GTAATGGTGCTCCTGATTTGTTTGCAAGTTTGGTCTCTTTCATGGGAGAATC-AAAGGGT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 419 GTAATGGTGCTCCTGATTTGTTTGCAAGTTTGGTCTCTTTCATGGGAGAATCTAAA-GGT 477
Query 478 ACTTATGATGTTGGTCTCAACACTGTTGTGGGAGGTTCTGGTTTTGTTACCTGTGTTGTT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTTATGATGTTGGTCTCAACACTGTTGTGGGAGGTTCTGGTTTTGTTACCTGTGTTGTT 537
Query 538 GTTGGGATCATTAGCATTTCGTTGCATA-GCAGACGTGTGAGGATTGAGAGAGCTGCTTT 596
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||
Sbjct 538 GTTGGGATCATTAGCATTTCGTTGCATAAG-AGACGTGTGAGGATTGAGAGAGCTGCGTT 596
Query 597 TATAAGAGACATTTGCTTCTTCTGTGCTGCGATTGGTTCTTTGGCCTTGATTTTGGTCTA 656
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 597 TATAAGAGACATTTGCTTCTTCTGTGCTGCTATTGGTTCTTTGGCTTTGATTTTGGTCTA 656
Query 657 TGGAAAGATCAATTTTTGGGGTGCTCTTGGGTTCTGTTCGTTGTATGCTGTCTATGTTGC 716
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 657 TGGAAAGATCAATTTCTGGGGTGCTCTTGGGTTTTGTTCATTGTATGCTGTTTATGTTGC 716
Query 717 GTTTGTG-TATCTCTCTTGGAGATTTGGTGGAGATCAAGGTGCTGAATCTGATCTCGAGT 775
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 CTTTGTGGT-TCTCTCTTGGAGATTTGGTGGAGATCAAGGTGCTGAATCTGATCTTGAGT 775
Query 776 CAATCCATAAGCGTGGTAGTCTTAGTGAACCAATCTTGCAGAGAGACGGTCTTGAGGAGA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 776 CAATCCATAAGCGTGGTAGTCTTAGTGAACCAATCTTGCAGAGAGACGGTCTTGAGGAAA 835
Query 836 TCGAAGATGGTGTTGTTAATGGAGAGCATCAGATTGTTGATGATGATGATCATCACCAGA 895
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 836 TTGAAGATGGTGTTGTTAATGGAGAGCATCAGATTGTTGATGATGATGATGATCACCAGA 895
Query 896 GATTTTATTACTGGAAAAGATTGGTCCTTTGGGTTATCACTCTGCCTCTCAACTTGCCAA 955
||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 896 GATATTATTACTGGAAAAGATTGGTCATTTGGGCTATCACTCTGCCTCTCAACTTGCCAA 955
Query 956 GGATATTGACTATTCCTGTTGTGAGTGAAGCCAAATGGTCTAAACCATTAGCTGTTGCCT 1015
||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 956 GGATATTAACAATTCCTGTAGTGAGTGAAGACAAATGGTCTAAACCATTAGCTGTTGCCT 1015
Query 1016 CTGTCACATTTGCGCCGGTTCTGTTGTCGTTTCTATGGAACTGGAAGCGGAAACCGACGA 1075
| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1016 CGGTCACATTTGCCCCGGTTCTGTTGTCGTTTTTATGGAACTGGAAGCGGAAACCGACGA 1075
Query 1076 GTTTTGAGGCGGGGATTGTTTATCTAATCGGGTGTTTGATCGGTATAGCTCTTGGTTTCA 1135
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1076 GTTTTGAGGCGGGGGTTGTTTATCTCATCGGGTGTTTGATCGGTATAGCTCTTGGTTTCA 1135
Query 1136 TTGCAGGAGCCACTACGAAGAAATCAACCCCGCCAAAGAAATGGTTGTTGCCTTGGTTAG 1195
||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1136 TTGCAGGAGCCACGACGAAGAAATTAACCCCACCAAAGAAATGGTTGTTGCCTTGGTTAG 1195
Query 1196 CAGGAGGATTTGTAATGAGCATGACATGGAGTTACATATCAGCGCAAGAGCTAGTAGCGC 1255
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1196 CAGGAGGGTTTGTAATGAGCATGACATGGAGTTACATATCAGCACAAGAGCTAGTTGCGC 1255
Query 1256 TTTTGACCTCACTGGGGTACATTTTCGGGGTAAGCCCTTCGATCTTAGGCCTAACAGTCC 1315
||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct 1256 TTTTGACCTCACTAGGATACATTTTCGGTGTAAGCCCTTCGATCTTAGGCTTAACGGTCC 1315
Query 1316 TC 1317
||
Sbjct 1316 TC 1317
Score = 520 bits (281), Expect = 2e-146
Identities = 305/317 (96%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 1364 CGCTGCACGATGGGAACGAAGGAGCTCAAGTGGCTGTATCAGGATGTTACGCCGGTCCAA 1423
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1364 CGCTACACGATGGGAACGAAGGAGCTCAAGTGGCTGTATCGGGATGTTACGCCGGTCCGA 1423
Query 1424 TCTTCAATACATTGTTCGCTCTCGGGATATCGCTTGTGGGATGCGCATGGGAGGCTTATC 1483
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1424 TCTTCAATACATTGTTTGCTCTCGGGATATCGCTTGTGGGATGTGCATGGGAGGCTTATC 1483
Query 1484 CGTCGAGCATTGTGATTAAGACAGATCCTCGTTTGTTGGAGAGTCTTGGGTTTCTGGTTG 1543
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1484 CGTTGAGCATTGTGATTAAGACAGATCCTCGTTTGTTGGAGAGTCTTGGATTTCTGGTCG 1543
Query 1544 TAGGACTGGTTTGGTCGTTCTTGGTTCTGTTTAGTAACCGTATGAGGCTTGGTGGTGTGA 1603
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 CAGGACTGGTATGGTCGTTCTTGGTTCTGTTTAGTAACCGTATGAGGCTTGGTGGTGTGA 1603
Query 1604 TGGGCATAGGGCTTTTGGTTATTTACTTAGCTTCGTTGTCTCTAAGAATTATGCAAACCG 1663
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1604 TGGGCATAGGGCTTTTGGTTATTTACTTGGCTTCATTGTCTCTAAGAATTATGCAAACCG 1663
Query 1664 TTGGAGATGCTCACTAA 1680
|||||||||||||||||
Sbjct 1664 TTGGAGATGCTCACTAA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5