BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893763
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18420.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2013 0.0
> AT5G18420.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF2363
(InterPro:IPR019312); Has 233 Blast hits to 233 proteins in
86 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi -
2; Plants - 59; Viruses - 0; Other Eukaryotes - 66 (source:
NCBI BLink). | chr5:6105522-6109385 REVERSE LENGTH=1493
Length=1493
Score = 2013 bits (1090), Expect = 0.0
Identities = 1247/1322 (94%), Gaps = 14/1322 (1%)
Strand=Plus/Plus
Query 1 ATGATGATTATGAAGATTGAAGAGTCGGCGATTGTTTTGTCTCTGCTCAAATCGGATCTC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ATGATGATTATGAGGATTGAAGAGTCGGCGATTGTTTTGTCTCTGCTCAAATCGGATCTC 123
Query 61 CGGCCGATGGATGACGTTTTATCGGAATTCAACTCCAAGTTCGATGATAGCTCTCGTTTC 120
||||||||||| |||||||||||||||||| |||| |||||||| | ||| |||||| |
Sbjct 124 CGGCCGATGGAAGACGTTTTATCGGAATTCGACTCTAAGTTCGA--A-AGCGCTCGTTAC 180
Query 121 TTCAGTGTCTGCAATTCTCTTTCCATGATGTTGCAGGATCAAAAGACGCTTCAGAATACT 180
|||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||
Sbjct 181 CTCAGTGTCTGCAATTCTCTTTCCATGATGTTGCAGGATCAGCAGATGTTTAAGAATACT 240
Query 181 GAACGTCTAATTGCATTTGCTATCATACATCAGTGTTATTCTTCCCAGAAGCCATCTCTC 240
||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||| ||
Sbjct 241 GAACGTCTAATTGCATTTGGTATCATATACCAGTGTTATTCTTCACAGAAGCCATCTTTC 300
Query 241 AACCCGTTTTTATCTGAAATGATGAGTGCTGCTTGTAATGAGCAACTAGAAAAGTCTGAG 300
||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 301 AACCCGTTTTTATCTGAAATGATAAGTGCTGCTTGTAATGAACAGCTGGAAAAGTCTGAA 360
Query 301 AGGGCATTTCTTCTCCACCTGTTACAATGGAATAGTTACAACAACGTGAAAGAGATTCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGGCATTTCTTCTCCACCTGTTACAATGGAATAGTTACAACAACGTGAAAGAGATTCTC 420
Query 361 AAACAGTCAGCTGTTGATTATATCAGATCGTTTGATCCTTCAACTCATGATTTTCCGGAA 420
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACTCTCAGCTGTTGATTATATCAGATCGTTTGATCCTTCAACTCATGATTTTCCGGAA 480
Query 421 CTAGGAGAGCTGCAACGAGAGTATGGTGACAAAGCCGATCCTGGACCATCTAGTCACATT 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CTAGGAGAGCTGCAACGAGAGTATGGCGACAAAGCCGATCCTGGACCATCTAGTCACATT 540
Query 481 TTTGCAGACTATTCCCTCAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGCGAT 540
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TTTGCAGACTATTCCCTGAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGTGAT 600
Query 541 CCTAACTCTCCAGAGTATGTGTTTGATGTGCAACCTGGAGGGAACCCCAGAATTGGATCT 600
|||||||||||||||| | || |||||||| |||||| ||| |||||||||||||||
Sbjct 601 CCTAACTCTCCAGAGT-T-TG----ATGTGCAAGCTGGAGTGAATCCCAGAATTGGATCT 654
Query 601 GGTGATAGGGATGAGGCCCTGTCTGGATTCTTGGGAAATTCGACAATGGGGGGATTAGCT 660
||||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||| |
Sbjct 655 GGTGATAGGGATGAGGCACTATCTGGATTCTTAGGAAATTTGACAATGGGGGGATTAGGT 714
Query 661 CCTAGGTGGATCCGTCCATGTCCACCAAGGTACCCAGTTCATCAGAGCGAGTTGCTTTGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CCTAGGTGGATCCGTCCATGTCCACCAAGGTACCCAGTTCATCAGAGCGAGTTGCTTTGG 774
Query 721 ATTGATCCTGATAACAAGCATGAGCTTGTTTGGGATGATAAAATGTGTGCTGATACAAGC 780
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 775 ATTGACCCTGATAACAAGCATGAGCTTGTTTGGGACGATAAAATGTGTGCTGATACTAGC 834
Query 781 AGAGGTGCAACAGTTAGAGACTTGCTTGTTAAGGGTTTAAAGGTGACACTTTCACCTACG 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGTGGTGCAACAGTTAGAGACTTGCTTGTTAAGGGTTTAAAGGTGACACTTTCACCTACG 894
Query 841 GAGCAAGAGGACATCACTACAGAATTGGCAAATGACCCAAAGCTTGTCTATCACTGTGGA 900
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 895 GAGCAAGAGGACATCATTACAGAATTGGCAAATGACCCAAAGCTTGTCTTTCACTGCGGA 954
Query 901 ATAACTCCACGGAAGCTGCCGCAATTAGTAGAGCATAATCCTCAAATAGCAGTTGAGATT 960
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 955 ATAACTCCACGGAAGCTGCCGCAATTAGTAGAGCACAATCCTCAGATAGCAGTTGAAATT 1014
Query 961 CTCACCAAGTTGATTAAATCCCCAGATATTGCTGACTATTTT-ACAGCTCTAGTAAGTAT 1019
||||||||||||| ||| ||| |||| ||| |||||||| | | |||||||| || |||
Sbjct 1015 CTCACCAAGTTGAATAACTCCACAGAGATTAATGACTATTATGA-AGCTCTAGGAAATAT 1073
Query 1020 GGACATGAGCCTGCACTCAATGGAAGTTGTGAATAGGCTCACTACTGCAGTTGAACTTCC 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1074 GGACATGAGCCTGCACTCAATGGAAGTTGTGAATAGGCTCACAACTGCAGTTGAACTTCC 1133
Query 1080 CAAGGAATTCATACGGATGTACATAACTAATTGCATATCGTCTTGTGGGAACGCTAAGCA 1139
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1134 CAAGGACTTCATACGGATGTACATCACTAATTGCATATCGTCTTGTGAGAACGCTAAGCA 1193
Query 1140 GCAAGACAAATACATGCAGAATAGGCTTGTACGGCTTGTTTGCGTATTCTTGCAAAGCTT 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1194 GCAAGACAAATACATGCAGAATAGGCTTGTACGGCTTGTTTGCGTCTTCTTGCAAAGCTT 1253
Query 1200 AATTCGTAACAACATCATCAACGTGAAGGATCTATTCATAGAAGTTCAAGCTTTCTGCAT 1259
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AATTCGTAACAAGATCATCAACGTGAAGGATCTATTCATAGAAGTTCAAGCTTTCTGCAT 1313
Query 1260 TGAGTTTTCTCGGATTCGAGAAGCAGCTGGTCTCTTCAGGCTTTTGAAAACA-TTGGAAT 1318
||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1314 TGAGTTTTCTCGGGTTCGAGAAGCAGCTGGTCTCTTCAGGCTTTTGAAA-CAATTGGA-T 1371
Query 1319 GA 1320
||
Sbjct 1372 GA 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5