BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894102
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22300.1 | Symbols: NIT4, AtNIT4 | nitrilase 4 | chr5:737919... 1522 0.0
AT3G44320.1 | Symbols: NIT3, AtNIT3 | nitrilase 3 | chr3:159933... 496 3e-139
> AT5G22300.1 | Symbols: NIT4, AtNIT4 | nitrilase 4 | chr5:7379199-7381935
FORWARD LENGTH=1441
Length=1441
Score = 1522 bits (824), Expect = 0.0
Identities = 996/1079 (92%), Gaps = 12/1079 (1%)
Strand=Plus/Plus
Query 1 ATGACCATGCAACAAGAAATGTCTCTTGTCACGGCGGCT-C-C--TCC--CGTCGATCAA 54
||| ||||||||||||||| ||||| | ||||||||| | | || || | |||||
Sbjct 203 ATGTCCATGCAACAAGAAACGTCTCACATGACGGCGGCTCCACAGACCAACGGCCATCAA 262
Query 55 ATCTTCCCTGAGGTTGACATGTCCGCCGGCGATTCTTCCTCCATCGTACGAGCTACCGTC 114
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 263 ATCTTCCCTGAGATTGACATGTCCGCCGGCGATTCCTCCTCCATCGTACGAGCTACAGTC 322
Query 115 GTCCAAGCCTCCACCGTCTTCTACGATACTCCCGCCACGCTAGATAAGGCGGAGAGATTG 174
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 323 GTCCAAGCCTCTACAGTCTTCTACGATACTCCCGCCACGCTAGATAAGGCAGAGAGACTG 382
Query 175 CTTGCTGAGGCGGCGGACAATGGGTCTCAGCTTGTGGTGTTCCCGGAGGCTTTTATCGGT 234
||| ||||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 383 CTTTCTGAGGCAGCGGAGAATGGATCTCAGCTAGTGGTGTTCCCGGAGGCTTTCATCGGT 442
Query 235 GGATATCCTCGTGGCTCTAGCTTCGAATTGGCGATTGGTGCTCGCACCGCTAAAGGAAGA 294
|||||||| |||||||||| ||| |||||||| |||||| |||| |||||||||||| ||
Sbjct 443 GGATATCCACGTGGCTCTACCTTTGAATTGGCTATTGGTTCTCGTACCGCTAAAGGACGA 502
Query 295 GATGATTTTCGCAAATACCATGCTTCTGCCATTCATGTTCCTGGCCCTGAAGTGGAACGA 354
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 503 GATGACTTTCGCAAGTACCATGCTTCTGCCATTGATGTTCCTGGCCCTGAAGTGGAACGA 562
Query 355 TTGGCGGAAATGGCCAAGAAGTATAAAGTATTCTTGGTTATGGGTGTGATAGAGAGGGAA 414
|| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 563 TTAGCGTTAATGGCCAAGAAGTACAAAGTATACTTGGTTATGGGTGTGATAGAGAGGGAA 622
Query 415 GGCTATACGCTATATTGCACCGTTCTTTTCTTTGATTCACAAGGTCAGTTCTTGGGTAAG 474
||||| |||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct 623 GGCTACACGCTATACTGCACCGTTCTTTTCTTCGATTCACAAGGTCTGTTCTTAGGTAAG 682
Query 475 CATCGGAAACTCATGCCTACAGCTCTTGAACGTTGCATCTGGGGATTTGGAGATGGATCA 534
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 683 CACCGCAAACTCATGCCTACAGCTCTTGAACGTTGCATTTGGGGATTTGGAGATGGATCA 742
Query 535 ACCATCCCTGTTTTCGATACTCCTATTGGCAAAATCGGTGCTGCTATTTGTTGGGAAAAT 594
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 743 ACCATCCCTGTGTTCGATACTCCTATTGGGAAAATCGGTGCTGCTATTTGTTGGGAAAAT 802
Query 595 AGGATGCCGTCTTTAAGAACCGCAATGTATGCCAAAGGCATTGAGATTTATTGTGCACCT 654
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AGGATGCCTTCTTTGAGAACCGCAATGTATGCCAAAGGCATTGAGATTTATTGTGCACCT 862
Query 655 ACTGCTGATTCTAGAGAAACTTGGCTAGCATCAATGACTCACATCGCTCTTGAAGGTGGA 714
||||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 863 ACTGCTGATTCAAGAGAAACTTGGCTAGCATCAATGACTCATATTGCACTTGAGGGTGGA 922
Query 715 TGTTTTGTTTTGTCGGCTAACCAGTTTTGTCGCCGGAAAGACTATCCTCCTTCACCAGAA 774
|||||||||||||| ||||||||||||||||| ||||||||||||||| || | || |||
Sbjct 923 TGTTTTGTTTTGTCAGCTAACCAGTTTTGTCGTCGGAAAGACTATCCTTCTCCGCCGGAA 982
Query 775 TACATGTTTTCCGGTTCAGAAGAGAGCCTAACACCGGACTCTGTTGTCTGCGCCGGTGGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 983 TACATGTTTTCCGGTTCAGAAGAGAGCCTAACACCGGACTCTGTTGTCTGCGCTGGTGGA 1042
Query 835 AGCTCTATCATTTCACCTTTGGGAATCGTTTTAGCTGGACCAAACTAT-GAAGGAGAGGC 893
|||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||
Sbjct 1043 AGCTCTATCATTTCACCTTTGGGAATTGTTTTAGCTGGACCAAACTATAGA-GGAGAAGC 1101
Query 894 TCTTATCACAGCTGATCTAGATCTTGGGGACATAGCACGAGCCAAGTTTGATTTCGATGT 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1102 TCTTATCACAGCTGATCTAGATCTTGGGGACATAGCACGAGCCAAGTTTGATTTTGATGT 1161
Query 954 GGTCGGGCATTACTCGAGACCTGAAGTGTTTAGCTTGAACATAAGGGAGCATCCGAGAAA 1013
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GGTCGGACATTACTCGAGGCCTGAAGTGTTTAGCTTGAACATAAGGGAGCATCCGAGAAA 1221
Query 1014 AGCGGTTAGTTTCTCCACTACGTCAAAGGTAATGAAAGATGAATCCGTC-AACAAATGA 1071
|||||| || ||| | ||||||||||||||| |||||||||||||| |||||||||
Sbjct 1222 AGCGGTCAGCTTCA--AG-ACGTCAAAGGTAATGGAAGATGAATCCGTCTAACAAATGA 1277
> AT3G44320.1 | Symbols: NIT3, AtNIT3 | nitrilase 3 | chr3:15993379-15995811
FORWARD LENGTH=1399
Length=1399
Score = 496 bits (268), Expect = 3e-139
Identities = 739/960 (77%), Gaps = 58/960 (6%)
Strand=Plus/Plus
Query 91 TCCTCCATCGTACGAGCTACCGTCGTCCAAGCCTCCACCGTCTTCT-ACGATACTCCC-G 148
||||||| |||||||| |||| |||| ||| | ||||||||| | | | ||||| ||| |
Sbjct 104 TCCTCCACCGTACGAGTTACCATCGTTCAATCTTCCACCGTC-TATAATGATAC-CCCGG 161
Query 149 CCACGCTAGATAAGGCGGAG-AGATTGCTTGCT-GAGGCGGCGGA-CAATGG-GTCTCAG 204
|||| |||| ||||||||| || || ||| | |||||||| || ||| || | | ||
Sbjct 162 CCACTTTAGACAAGGCGGAGAAG-TTTATTG-TGGAGGCGGC-GAGCAAAGGAG-CGAAG 217
Query 205 CTT-GTGGTG-TTCCCGGAGGCTTTTATCGGTGGATATCCTCGTGGCTCTAGCTTCGAAT 262
|| ||| || ||||| ||||| || ||||| || |||||||| || | ||| || | |
Sbjct 218 -TTGGTGTTGTTTCCC-GAGGCGTTCATCGGCGGTTATCCTCGAGGTTTTAGGTTTGGTT 275
Query 263 TGGCGATTGGTGCTCGCACCGCTA-AAGGAAGAGATGATTTTCGCAAATACCATGCTTCT 321
| ||| | || | || | || | |||| | ||||| ||||| || ||||||||||||
Sbjct 276 TAGCGGTGGGAGTTCATAACG-AAGAAGGGCGTGATGAGTTTCGTAACTACCATGCTTCT 334
Query 322 GCCATTCATGTTCCTGGCCCTGAAGTGGAACGATTGGCGGAAATGGCCAAGAAGTATAAA 381
|| ||| | || |||||||||||||||||| ||||||| || ||||| ||| ||||
Sbjct 335 GCTATTAAAGTCCCTGGCCCTGAAGTGGAAAGATTGGCTGAGTTGGCCGGGAAAAATAAT 394
Query 382 GTATTCTTGGTTATGGGTG-TGATAGAGAGGGAAGGCTATACGCTATATTGCACCGTTCT 440
|| |||||| ||||| | | ||||||| ||| || ||||| || |||||||| | |||
Sbjct 395 GTGCACTTGGTAATGGGGGCT-ATAGAGAAGGATGGTTATACACTCTATTGCACAGCTCT 453
Query 441 TTTCTTTGA-TTCACAAGGTCAGTTCTTGGGTAAGCATCGGAAACTCATGCCTACAGCTC 499
|||| || | | ||||||||||||| || |||||||| || ||| ||||||| ||| ||
Sbjct 454 TTTC-TTCAGTCCACAAGGTCAGTTTTTAGGTAAGCACCGTAAAGTCATGCCCACATCT- 511
Query 500 TT-GAACGTTGCATCTGGGGAT-TTGGAGATGGATCAACCATCCCTGTTTTCGATACTCC 557
|| ||||||||||| ||||| | || || |||||||||||||| |||| ||| |||||
Sbjct 512 TTGGAACGTTGCATATGGGG-TCAAGGGGACGGATCAACCATCCCCGTTTACGACACTCC 570
Query 558 TATTGGCAAAATCGGTGCTGCTATTTGTTGGGAAAATAGGATGCCGTCTTTA-AGAACCG 616
||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||| |
Sbjct 571 TATTGGCAAAATCGGTGCTGCTATTTGCTGGGAGAATAGGATGCC-CCTCTACAGAACTG 629
Query 617 CAATGTATGCCAAAGGCATTGAGATTTATTGTGCACCTACTGCTGATTCTA-GA-GAAAC 674
|| |||| || ||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 630 CATTGTACGCTAAAGGCATTGAGATTTATTGTGCACCTACTGCTGATTATTCGTTGGAA- 688
Query 675 TTGGCTAGCATCAATGACTCACATCGCTCTTGAAGGTGGATGTTTTGTTTTGTCGGCTAA 734
| ||| |||||| |||| |||||| || | |||||||||||||| || ||||| || |
Sbjct 689 T-GGCAAGCATCGATGATTCACATTGCGGTAGAAGGTGGATGTTTCGTGTTGTCAGCGCA 747
Query 735 CCAGTTTTGTC--GCCGGAAAGACTATCC-TCCTTCA-CCAGAATACATGTTTTCCGGT- 789
|||||| || | || | | ||| | ||| | || || || ||| ||||| |
Sbjct 748 CCAGTTCTG-CAAGC-GTAGAGAGT-TCCCTGAA-CATCCTGATTACTTGTTTAATGACA 803
Query 790 TCAGAAGAGAGCCTAAC-ACCG-GACTC-TGTTGTCTGCGCCGGTGGAAGC-TCTATCAT 845
| || ||| | | ||| | | || || | ||||| || |||||||| || || ||
Sbjct 804 T-AGTAGACA-C-TAAAGAACATGA-TCCTACTGTCTCCGGAGGTGGAAGTGTC-ATTAT 858
Query 846 TTCACCTTTGGGAATCGTTTTAGCTGGACCAAACTATGAAGGAGAGGCTCTTATCACAGC 905
|||||||||||||| ||| | || ||||||||||||||| ||||| ||| |||||||
Sbjct 859 TTCACCTTTGGGAAAGGTTCTCGCCGGACCAAACTATGAATCAGAGGGTCTCGTCACAGC 918
Query 906 TGATCTAGATCTTGGGGACATAGCACGAGCCAAGTT-TGATTTCGATGTGGTCGGGCATT 964
|||||| |||||||| || |||||| |||||||||| | | ||||||||||| || ||||
Sbjct 919 TGATCTTGATCTTGGTGATATAGCAAGAGCCAAGTTAT-ACTTCGATGTGGTTGGACATT 977
Query 965 ACTCGA-GACCTGA-AGTGTTTAGCTTGAACATAAGGGAGCATCCGA-GAAAAGCGGTTA 1021
|||| | | || || | | |||| ||||| | ||| ||||| |||| |||| ||||||
Sbjct 978 ACTCAAAG-CCAGATATT-TTTAACTTGACCGTAAATGAGCACCCGAAGAAAC-CGGTTA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5