BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894306 Length=1557 Score E Sequences producing significant alignments: (Bits) Value AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:81... 2289 0.0 AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding oxidored... 2025 0.0 AT5G24155.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 396 4e-109 > AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:8183075-8186640 REVERSE LENGTH=1809 Length=1809 Score = 2289 bits (1239), Expect = 0.0 Identities = 1455/1560 (93%), Gaps = 11/1560 (1%) Strand=Plus/Plus Query 5 ATATCGCTTTTACGCACGTTT-TTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGACG 63 |||| |||||||||||||||| || |||||||| || |||||||||||||||| |||||| Sbjct 38 ATATGGCTTTTACGCACGTTTGTT-TATGGACGTTAGTCGCCTTCGTGCTGACGTGGACG 96 Query 64 GTGTTCTACGTTACAAACAGGGGGAAGAAGGCAACGAAGTTGGCGGATGCGGTGG-TGGA 122 ||||||||| |||| |||| | ||||||||| ||| | ||||| ||| |||||| | || Sbjct 97 GTGTTCTACCTTACCAACATGAAGAAGAAGGCGACGGATTTGGCTGATACGGTGGCT-GA 155 Query 123 AGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGC 182 || | ||||||||||||||||||||| || ||||| |||||||| || || || ||||| Sbjct 156 GGATCAAAAAGACGGTGCTGCTGACGTCATTATCGTCGGGGCTGGTGTAGGTGGTTCGGC 215 Query 183 TCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACATGAG 242 |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 216 TCTCGCATATGCTCTTGCTAAGGATGGGCGTCGAGTACATGTGATCGAGAGGGACATGAG 275 Query 243 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTCTAA 302 ||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 276 AGAACCAGAAAGAATGATGGGTGAGTTTATGCAACCTGGCGGACGACTCATGCTTTCTAA 335 Query 303 GCTTGGCCTTCAAGATTGTTTGGAAGACATAGATGCACAGAAAGCCACGGGCTTCGCAGT 362 ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 336 ACTTGGCCTTCAAGATTGCTTGGAAGACATAGATGCACAGAAAGCCACGGGTTTGGCAGT 395 Query 363 TTATAAGGATGGAAAAGAAGCAGTCGCACCTTTTCCAGTGGAAAACAACAACTTTTCTTA 422 |||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||| Sbjct 396 TTATAAAGATGGAAAAGAAGCAGACGCACCTTTTCCAGTGGATAACAACAATTTTTCTTA 455 Query 423 TGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTTGTCCAGCAATTGCGTCGAAAGGC 482 |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| Sbjct 456 TGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACAACTGCGTCGAAAGGC 515 Query 483 TTCTTCTCTTCCCAATGTGCGCCTCGAAGAAGGAACGGTGAAGTCTTTAATAGAAGAAAA 542 || ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 516 TTTTTCTCTTTCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTACTAGAAGAAAA 575 Query 543 AGGAGTGATCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAAGAGCCTTGGC 602 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 576 AGGAGTGGTCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAACAGCCTTGGC 635 Query 603 ACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGTAGGTCTCTT-A--ATGA 659 |||||||||||| |||||||||||||||||||||||||||||| |||||||| | |||| Sbjct 636 ACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAATGATGA 695 Query 660 CAACAATGCGGAGATTCTGTCGTACCTAGTTGGTTTCATCTCCAAGAATTGTCGACTTGA 719 ||||||||| |||||| |||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct 696 CAACAATGCTGAGATTATGTCGTACATAGTTGGTTACATCTCAAAGAATTGTCGGCTTGA 755 Query 720 AGAACCCGAAAA-CTTACATTTGATATTGTCTAAACCTTCTTTCACCATGGTATATCAAA 778 |||||||||||| | |||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 756 AGAACCCGAAAAGC-TACACTTGATATTGTCTAAACCATCTTTCACCATGGTATACCAAA 814 Query 779 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAAAATTTTCCTTCTATTG 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 815 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAAAATTTTCCTTCTATTG 874 Query 839 CAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAAC 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 CAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAAC 934 Query 899 TCCGCAAAATATTTTTGAAAGGAATAAATGAGGGAGCACAGATAAAAGTCGTGCCAGCAA 958 |||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||| |||| Sbjct 935 TCCGCAAAATATTTTTGAAAGGTATAGATGAGGGAGCACACATAAAAGTGGTGCCGGCAA 994 Query 959 AGCGCATGTCAGCTAGTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATTCA 1018 |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 995 AGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATTCA 1054 Query 1019 ACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTACTGTCTGACATTCTCATTC 1078 | ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| Sbjct 1055 ATATGCGTCATCCAGTTGTTGCATCTGGAATGATGGTTTTACTGTCGGACATTCTCATTC 1114 Query 1079 TACGCCGTCTTCTCCAGCCATTAAGCAACCTCGGCGATGCTAACAAAGTCTCAGAAGTTA 1138 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1115 TACGCCGTCTTCTTCAGCCATTAAGCAACCTCGGCGATGCAAACAAAGTCTCAGAAGTTA 1174 Query 1139 TCAATTCTTTTTAT-AGTATTCGCAAGCCAATGTCAGCGACGGTTAACACATTAGGAAAT 1197 ||||||| |||||| | ||| |||||||||||||| ||||||||||||||||| |||||| Sbjct 1175 TCAATTCCTTTTATGA-TATCCGCAAGCCAATGTCGGCGACGGTTAACACATTGGGAAAT 1233 Query 1198 GCATTTTCTCAAGTGCTAATTGGATCAACGGACGAAGCAAAAGAGGCAATGAGACAGGGT 1257 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1234 GCATTTTCTCAAGTACTAATTGGATCAACGGATGAAGCAAAAGAGGCAATGAGACAGGGT 1293 Query 1258 GTCTATGATTACCTTTGTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTCTGCTCGGC 1317 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1294 GTCTATGATTACCTTTGTAGTGGCGGGTTTCGTACGTCAGGGATGATGGCTCTGCTCGGC 1353 Query 1318 GGCATGAATCCTCGTCCGCTCTCTCTTATCTATCATCTCTGTGCTATCACTATATCCTCT 1377 ||||||||||||||||| |||||||| |||||||||| ||||| |||||| ||||||| Sbjct 1354 GGCATGAATCCTCGTCCTCTCTCTCTCGTCTATCATCTTTGTGCCATCACTCTATCCTCC 1413 Query 1378 ATTGGCCATCTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTCAAGCTT 1437 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1414 ATTGGCCAACTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTCAAGCTT 1473 Query 1438 TTTGGTTTGGCCTTGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGCCAAATG 1497 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1474 TTTGGTTTGGCCATGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGCCAAATG 1533 Query 1498 TTGTTTCCAGCAAATGCAGCCGCGTATCGCAAAAGCTATATGGCCGCAACCGCTCTCTAA 1557 |||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| Sbjct 1534 TTGTTTCCAGCAAATGCAGCCGCGTATCACAAAAGCTATATGGCTGCAACCACTCTCTAA 1593 > AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding oxidoreductase family protein | chr5:8172332-8175431 REVERSE LENGTH=1849 Length=1849 Score = 2025 bits (1096), Expect = 0.0 Identities = 1414/1567 (90%), Gaps = 24/1567 (2%) Strand=Plus/Plus Query 3 GGATATCGCTTTTACGCACGTTTTTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGAC 62 |||||| || |||||| |||||| |||||||||||||||||||| ||||||||||||| Sbjct 33 GGATATGGCCTTTACGAACGTTTGCCTATGGACGCTACTCGCCTTCATGCTGACTTGGAC 92 Query 63 GGTGTTCTACGTTACAAACAGGGGGAAGAAGGCAACGAAGTTGGCGGATGCGGTGGTGGA 122 ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || Sbjct 93 AGTGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTGGCGGATGCGGTGGTTGA 152 Query 123 AGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGC 182 ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 153 AGAGCGAGAAGACGGTGCTACTGACGTTATCATCGTTGGGGCTGGAGTAGGCGGCTCGGC 212 Query 183 TCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACATGAG 242 ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |||| Sbjct 213 TCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGTAATAGAGAGGGACCTGAG 272 Query 243 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTCTAA 302 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 273 AGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGGACGACTCATGCTCTCTAA 332 Query 303 GCTTGGCCTTCAAGATTGTTTGGA-AGACATAGATGCACAGAAAGCCACGGGCTTCG-CA 360 |||||| ||| ||||||||||||| || |||||||| || |||||||||||| | | || Sbjct 333 GCTTGGTCTTGAAGATTGTTTGGAGGGA-ATAGATGCCCAAAAAGCCACGGGCAT-GACA 390 Query 361 GTTTATAAGGATGGAAAAGAAGCAGTCGCACCTTTTCCAGTGGAAAACAACAACTTTT-C 419 ||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||| | Sbjct 391 GTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGACAACAACAA-TTTTCC 449 Query 420 TTATGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTTGTCCAGCAATTGCGTCGAAA 479 || ||| ||||| |||||||||||||||||||||||||| ||||| | |||||| | ||| Sbjct 450 TTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCAACGATTGCGGCAAAA 509 Query 480 GGCTTCTTCTCTTCCCAATGTGCGCCTCGAAGAAGGAACGGTGAAGTCTTTAATAGAAGA 539 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 510 GGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTGATAGAAGA 569 Query 540 AAAAGGAGTGATCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAAGAGCCTT 599 |||||||||||||||||||||||||||||| |||| | |||||||||||||| |||||| Sbjct 570 AAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGCCTT 629 Query 600 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGTAGGTCTCTTAATGA 659 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 630 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGCCGGTCTCTTAATGA 689 Query 660 CAACAATGCGGAGATTCTGTCGTACCTAGTTGGTTTCATCTCCAAGAATTGTCGA-CTTG 718 ||||||||||||| ||||||| |||| ||||||||| ||||| ||||| |||| | |||| Sbjct 690 CAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAAAGAACTGTC-AGCTTG 748 Query 719 AAGAACCCGAAAACTTACATTTGATATTGTCTAAACCTTCTTTCACCATGGTATATCAAA 778 ||||||||||||| ||| | |||||| |||||||||| || ||||||||| | ||||||| Sbjct 749 AAGAACCCGAAAAGTTAAAGTTGATAATGTCTAAACCCTCCTTCACCATGTTGTATCAAA 808 Query 779 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAA-AATTTTCCTTCTATT 837 | |||||||| ||||||||||||| |||||| ||||||||| || || ||||||||||| Sbjct 809 TCAGCAGCACCGACGTTCGTTGTGTTTTTGAAGTTCTCCCC-AACAACATTCCTTCTATT 867 Query 838 GCAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAA 897 |||||||||||||| |||||||| ||||||| ||||| | ||||||||||||| |||| Sbjct 868 TCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCCTCAGGTACCTTTAAAA 927 Query 898 CTCCGCAAAATATTTTTGAAAGGAATAAATGAGGGAGCACAGATAAAAGTCGTGCCAGCA 957 ||||||||||||||||||||||| || |||| |||| ||| ||||||| | ||||| || Sbjct 928 CTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATATAAAAGCCATGCCAACA 987 Query 958 AAG-CGCATGTCAGCTAGTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATT 1016 ||| | ||| |||||| ||| ||| |||||||||| |||||| |||||||||||||||| Sbjct 988 AAGAAG-ATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTTTATTGGGAGATGCATT 1046 Query 1017 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTACTGTCTGACATTCTCAT 1076 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1047 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTCAT 1106 Query 1077 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTCGGCGATGCT-AACAAAGTCTCAGAAG 1135 ||||||||||||||||||||||||||||||||| ||| |||| || ||| ||||| ||| Sbjct 1107 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGCAAAAAA-TCTCACAAG 1165 Query 1136 TTATCAATTCTTTTTAT-AGTATTCGCAAGCCAATGTCAGCGACGGTTAACACATTAGGA 1194 ||||||| || |||||| | ||| |||||||||||||||||||| |||||||| |||||| Sbjct 1166 TTATCAAGTCCTTTTATGA-TATCCGCAAGCCAATGTCAGCGACAGTTAACACGTTAGGA 1224 Query 1195 AATGCATTTTCTCAAGTGCTAATTGGATCAACGGACGAAGCAAAAGAGGCAATGAGACAG 1254 |||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct 1225 AATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAAAAGAGGCAATGAGACAA 1284 Query 1255 GGT-GTCTATGATTACCTTTGTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTCTGCT 1313 ||| | |||||||||||| | |||||||||||||||||||||||||||||||||| |||| Sbjct 1285 GGTTG-CTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTTTGCT 1343 Query 1314 CGGCGGCATGAATCCTCGTCCGCTCTCTCTTATCTATCATCTCTGTGCTATCACTATATC 1373 ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 1344 AGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATC 1403 Query 1374 CTCTATTGGCCATCTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCT-CA 1432 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1404 CTCCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTTCG 1463 Query 1433 AGCTTTTTGGTTTGGCCT-TGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGC 1491 | |||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1464 A-CTTTTTGGTTTGGC-TATGAAAATGTTGGTTCCCCATCTCAAGGCTGAAGGAGTTAGC 1521 Query 1492 CAAATGTTGTTTCCAG-CAAATGCAGCCGCGTATCGCAAAAGCTATATGGCCGCAACCGC 1550 |||||||||||||||| ||| || ||||||||| |||||||||||||||| ||||| || Sbjct 1522 CAAATGTTGTTTCCAGTCAAC-GCCGCCGCGTATAGCAAAAGCTATATGGCTGCAACGGC 1580 Query 1551 TCTCTAA 1557 ||||||| Sbjct 1581 TCTCTAA 1587 > AT5G24155.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:8180118-8181027 REVERSE LENGTH=377 Length=377 Score = 396 bits (214), Expect = 4e-109 Identities = 283/317 (89%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 1 ATGGATATCGCTTTTACGCACGTTTTTGTATGGACGCTACTCGCCTTCGTGCTGACTTGG 60 |||||||| || ||||||||||||| | |||||||||||||||||||||||||||| ||| Sbjct 12 ATGGATATGGCCTTTACGCACGTTTGTCTATGGACGCTACTCGCCTTCGTGCTGACCTGG 71 Query 61 ACGGTGTTCTACGTTACAAACAGGGGGAAGAAGGCAAC-GAAGTTGGCGGATGCGGTGGT 119 ||||||||||||||||| |||||| ||||||||| | ||| ||||| ||||||| | Sbjct 72 ACGGTGTTCTACGTTACCAACAGGAAGAAGAAGGCGCCGGAA-TTGGCAGATGCGGCAGC 130 Query 120 GGAAGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTC 179 || ||| ||| |||| |||||||||| ||||||||||| ||||||||||| || ||||| Sbjct 131 AGAGGAGAGAAGAGACAGTGCTGCTGATGTTATCATCGTCGGGGCTGGAGTAGGTGGCTC 190 Query 180 GGCTCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACAT 239 ||||||||||||| |||||||||||||||| || ||||||| || |||||||||||| || Sbjct 191 GGCTCTCGCATATTCTCTTGCTAAGGACGGGCGCCGAGTACTTGCGATAGAGAGGGATAT 250 Query 240 GAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTC 299 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 251 GAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGGACGACTCATGCTTTC 310 Query 300 TAAGCTTGGCCTTCAAG 316 ||||||||||||| ||| Sbjct 311 TAAGCTTGGCCTTGAAG 327 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76857034395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5