BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894322
Length=4824
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24280.1 | Symbols: GMI1 | gamma-irradiation and mitomycin c... 3513 0.0
AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat pro... 398 3e-109
> AT5G24280.1 | Symbols: GMI1 | gamma-irradiation and mitomycin
c induced 1 | chr5:8251378-8262154 REVERSE LENGTH=4826
Length=4826
Score = 3513 bits (1902), Expect = 0.0
Identities = 2149/2268 (95%), Gaps = 17/2268 (1%)
Strand=Plus/Plus
Query 764 GTCTAACTCTCTTCTCTGTCAGACGTACTTTGGTGTCTTCTAAGACAAAAGATTCCAAGA 823
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 805 GTCTAACTCTCTTCTCTGTCAGGCGTACTTTGGTGTCTTCTAAGACAAAAGAGTCCAAGA 864
Query 824 AAGTGTTCACTTTGCAATTCAAGAAAGAAGCCTTGATTGACAATCGGTCTATCTTGGGAA 883
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 865 AAGTGTTCACTTTGCAATTCAAGAAAGAAGCATTGATTGACAATCGGTCTATCGTGGGAA 924
Query 884 AAAACTGGAAGACTGATGGTGGTATGAGGGACCCGTCGGAGGAGGAAATGGAGTTATCGC 943
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 925 AAAACTGGAAGACTGATGGTGGCATGAGGGACCCGTCGGAGGAGGAAATGAAGTTATCCC 984
Query 944 CTCATGGAAGCTTTACAAAGGTCGAGATATTTGAATCAGAATTTGACATCTCAAAAATAT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 985 CTCATGGAAGCTTTACAAAGGTCGAGATATTTGAATCAGAATTTGACATCTCAAAGATCT 1044
Query 1004 ATCAACTCCAGTGCAGGCTTAAGGATATTTACTTTCCTTACATCCAGTTCTGCCCTT-CG 1062
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||
Sbjct 1045 ATCAACTCCAGTGCAGGCTCAAGGATATTTACTTTCCTTACATCCAGTTTTG-CCTTGCG 1103
Query 1063 ACCATTTTCTTGTGTGATGAACTCTCCAAAACTGGGAGGACTGAAAGGCCTGTAGAGTTT 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1104 ACCATTTTCTTGTGTGATGAACTCTCCAAAACTGGGAGGACTGAAAGGCCTGTGGCGTTT 1163
Query 1123 CAGGTCAATGGGGAAGATTTAGCTGAGATAACAGGTGGAGAGGTTGCTATTACCAACCTA 1182
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1164 CAGGTCAATGGGGAAGATTTGGCTGAGATAGCAGGTGGAGAGGTTGCCATTACCAACCTA 1223
Query 1183 CACTCCAAGGGTCAAGTATATTCATTTCAGATTCGATTCACTCTTACCGGTGGGAAAATA 1242
||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||| |
Sbjct 1224 CACTCCAAGGGTCAATTTTTTTCATTTCAGATTCGATTCACTCTTTTCGGTGGGAAAAGA 1283
Query 1243 AAAGGGACAACTCAAGAGGCAAATGCTCGCCTCAAGTTTGTTTATTTTCCAATCGTCCAG 1302
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AAAGGGACAGCTCAAGAGGCAAATGCTCGCCTCAAGTTTGTTTATTTTCCAATCGTCCAG 1343
Query 1303 GGAAAAGAAAGCATTGATAAAATTTTGGAGAGTTTAGAAGAGGAAGGATGCAAAGTTTCT 1362
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1344 GGAAAAGAAAGCATTGAGAAAATTTTGCAGAGTTTAGAAGAGGAAGGATGCAAAGTTTCT 1403
Query 1363 GAAAGCTTCCAGACTTTTGGTCGTGTTTCAGTAAGAAGGCTTGGTCGTTTACTTCCAGAA 1422
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1404 GAAAGCTTCCAGACTTTTGGCCGTGTTTCATTAAGAAGGCTTGGTCGCTTACTTCCAGAA 1463
Query 1423 GTCCGTTGGGATTCAATACCGTTTATGCAAAGAGGAAACAGAGCGTCTACTTTGCAGAAA 1482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1464 GTCCGTTGGGATTCAATACCGTTTATGCAAAGAGGAAACAGAGCTTCTACTTTGCAGAAA 1523
Query 1483 GGCTGCCGAAGAGTAAAATGCTTTGTTGATTTGGATGCTGGTTTTAGCCCAACGCCCTCC 1542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AGCTGCCGAAGAGTAAAATGCTTTGTTGATTTGGATGCTGGTTTTAGCCCAACGCCCTCC 1583
Query 1543 AAAACTGACCTTGCGAGCCAAAATCCTTTCTCAGTAGCTTTAAGAAACTTTGGTAGTAAA 1602
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1584 AAAACTGACCTTGCAAGCCAAAATCCTTTCTCAGTGGCTTTAAGAAACTTTGGTAGTAAG 1643
Query 1603 TCGACAGAGAAAGAGAAGGATGATGACGTCACTATTGTGACTCATAGAGAAGGAAAATCT 1662
||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 1644 TCGACGGAGAAAGAGAAGGATGATGATGTCAATATTGTGATTCATAGAGAAGGAAAATCT 1703
Query 1663 GTCAGCTATGCGCATCTGGATGAAAAATATCAAGAATGGGTTTTGGAGATGCATAATACC 1722
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1704 GTCAGCTATGCGCATCTGGAGGAAAAATATCAAGAATGGGTTTTGGAGATGCATAATACC 1763
Query 1723 CATGATGAAGAAGCTGCATCAGGTGC-AGATGAAGCTGTCCTCATTGTTGGATCCTTGGA 1781
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 1764 CATGATGAAGAAGCTGCATCGGGT-CTAGATGAAGCTGTCCTCATTGTTGGATCCTTGGA 1822
Query 1782 TAAAAAGGCCCTTGGCATTTTGCGTGATGCTGTGAGGGTGCACAAGGAAGTTACGAGAAA 1841
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1823 TAAAAAGGCCCTTGGCATTTTGCGTGATGCTGTGAGGGTGCATAAGGAAGTTAGGAGAAA 1882
Query 1842 AGGAATGTCATGGAAACGTGGTCAGAATATAAAGATTCTGAAAGGAGCTTATGCTGGGGT 1901
|| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1883 AGAAAAAACATGGAAACGTGGTCAGAATATAAAGATTCTGAGAGGAGCTTATGCTGGGAT 1942
Query 1902 TCACAATAACAATGTGTACGCCACCATTGACTATTTCCTAATTGAAGGGTTTGAGGACGA 1961
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1943 TCACAATAACAATGTGTATGCCACCATTGACTATTTCCTAATAGAAGGGTTTGAGGACGA 2002
Query 1962 AGCAGGCGGGGATACTCGGATTTTATGCAGGCCAATCGATCGCCCTGAGAATGAGGGATG 2021
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2003 AGCAGGCGGGGATACTCGGATTTTATGCAGGCCTATCGATCGCCCTGAGAACGAGGGATG 2062
Query 2022 CAAGCTTTCAATCATCGATGGAATTTCAAAACTGGAAGTTCAGAGTTCTTTATCTTTACC 2081
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2063 CAAGCTTTCAATCATCGATGGAATTTCGAAACTGGAAGTTCAGAGTTCTTTATCTTTACC 2122
Query 2082 GATCACTATAATCGACTCTGGAAAGTGCCTACATGTAGATGCAAACGAATGGAATAGAAA 2141
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 2123 GATCACTATAATCGACTCTGGAAAGTGCCTTCCTGTAGATGCGAACGAATGGAATAGAAA 2182
Query 2142 ACTTGATAAGCAACAGGAAAAGGCACCGTCAAAAATTGATTTGCTGGATGAGAGAGATTG 2201
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2183 ACTTGATAAGCAACAGGAAAAAGCACCGTCAAAAATTGATTTGCTGGATGAAAGAGATTG 2242
Query 2202 CAGAGAATTGAAAATTGATGGGGAACTACCGGTTGGTGATTCTGTGCGTGCTGGGAAAGC 2261
|||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2243 CAGAGAATTGAAGATTGATGGGGAACTACCCATTGGCAATTCTGTGCGTGCTGGGAAAGC 2302
Query 2262 TACC-CCGAAACAGATTGTTGCAGTTGTCCGACCTGCATGCTTCACGTCTTCAACTCCGT 2320
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2303 T-CCTCCGAAACAGATTGTTGCAGTTGTCCGACCTGCATGCTTCACGTCTTTAACTCCGT 2361
Query 2321 CGAAGAAGTTGGACCAGAAACATATTGTTAAGATGGATGGGGAAGAAATGGTCATGGTAG 2380
| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2362 CAAAGAAGTTGGACCAGAAAAATATCGTTAAGATGGATGGGGAAGAAATGGTCATGGTAG 2421
Query 2381 TAAAATTGAAATCGAGTGATAAGAATGTCAAACCTGTGTGTTCGCAGCGCATGTTTCCTA 2440
||||||||||||| |||||||||||| | | | | | |||||||| |||||||||
Sbjct 2422 TAAAATTGAAATCAAGTGATAAGAATAT-AT-C-T-T-----CGCAGCGCTTGTTTCCTA 2472
Query 2441 CATCCCGTAAAGGGATCAGTGGTCTTTACATCTTCCCACTTGGGTCCAAGTTTCCAAACC 2500
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2473 CATCCCGTAAAGGGATTAGTGGTCTTTACATCTTCTCACTTGGGTCCAAGTTTCCAAACC 2532
Query 2501 TTTTCAAGAAAGCTGGCACTTACAAGTTTTCTTTCTCCATTGGCAACTT-GATTAAGTGC 2559
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 2533 TTTTCAAGAAAGCTGGCACCTACAATTTTTCTTTCTCCATTGGCAA-TTCGATTAAGTGC 2591
Query 2560 AACAAAACGGTGGTTGTTAGACCTTGTTCTAAGGCAGCAAAGTGGGAACTTGACGTTAAT 2619
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 2592 AACAAAACGGTGGTTGTTAGACCTTCTTCTAAGGCAGCAAGGTGGGAACTTGACGATAAT 2651
Query 2620 CTGGAGTCCCTTCCGTGCAATGTTCGGGTGGGTTCTTCTCTTCCACCTTTCCGTATCGCT 2679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2652 CTGGAGTCCCTTCCGTGCAATGTTCGGGTGGGTTCTTCTCTTCCACCTTTCCGTATCGCT 2711
Query 2680 TGCTTTGATGAGTACAAAAACCAGATTCTGTTCTCTTCTGTTCCAAGCCTGGAAGTTGAA 2739
||||||||| ||||||||||| |||||| |||| ||||||||||||| ||||||||||||
Sbjct 2712 TGCTTTGATAAGTACAAAAACAAGATTCCGTTCACTTCTGTTCCAAGTCTGGAAGTTGAA 2771
Query 2740 CTGGAAGCTAACCCTGGATTCTTAATCAAAATTGATAAAATTGAGGCCAACCTGATAAAT 2799
||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 2772 TTGGAAGCTAGCCCTGGATTCTTAATCAAAATTGACAAACTTGAGACCAACCTGATAAAT 2831
Query 2800 GATGGATCAATTCTTAAAATCGAGAATATGCTCGTTGAGACTGATGGGTTAGACCAGATC 2859
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2832 GATGGATTAATTCTTAAAATCGAGAATATGCTCGTTGAGACTGATGAGTTAGACCAGATC 2891
Query 2860 CGACCTAATTATGAAGCAACACTAGAGATACGAGCAATGGACAAGCCTTTCTCTGTCTCG 2919
|||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||
Sbjct 2892 CGACCTAATTATGAAGCAACGTTAGAGATACGTGCAATGGACAATCCTTTTTCTGTCTCG 2951
Query 2920 GTTCCTTGTATAGTTAATCCTGGGCCTCTGAAACGAGTTGCTGTGAATAATCCCGAGGCT 2979
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2952 GTTCCTTGTAAAGTTAATCCCGGGCCTCTGAAACGAGTTGCTGTGAATAATCCCAAGGCT 3011
Query 2980 TTGGAGATTTTGCTTCCAGATTCCACTGTCGAAGATTTGATCCTGGAG 3027
|||| | ||||||||||||||| |||||||||||||| |||||||||
Sbjct 3012 CTGGAAAATTTGCTTCCAGATTCTACTGTCGAAGATTTTATCCTGGAG 3059
Score = 2484 bits (1345), Expect = 0.0
Identities = 1610/1738 (93%), Gaps = 18/1738 (1%)
Strand=Plus/Plus
Query 3088 GGGACTGATGTTCTGATACATATTGATGGTTATATTATTGAAGACTGGATGGGCATCAAC 3147
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3093 GGGACCGATGTTCTGATACATATTGATGGTTATCGTATTGAAGACTGGATGGGCATCAAC 3152
Query 3148 CGTAAGGTTGATGGCCGTGGCTGCATTGATCTCTCTGGCATTCTTAAGGTCACAGAAGGC 3207
|||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 3153 CGTAAGGTTGATAGTCGTGGCTGCATTAATCTATCTGGCATTCTTAAGGTCACAGAAGGC 3212
Query 3208 TATGGGAAATCTGTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAG 3267
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 3213 TATGGGAAATCTGTATCACTCTCTGTAATGTCTGGTAATGAAGTTATCTTCTGTAAAGAG 3272
Query 3268 TCTCAAATTGAGGAACGAGAGCTAAGACTTGTAACCAAGCTGCCCGACTTCTGTGCTGCT 3327
|| |||||||| |||||| ||||||||||||||||| |||||||||||| |||| |||||
Sbjct 3273 TCACAAATTGATGAACGACAGCTAAGACTTGTAACCGAGCTGCCCGACTGCTGTACTGCT 3332
Query 3328 GGTTCAAATCTCGTGAACCTCATTTTCCAAGTGACAGATTTAGATGGTTCTTTGGATACT 3387
||| |||||||| |||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 3333 GGTACAAATCTCATGAACCTCATCTTCCAAGTGACGGAGTTAGATGGTTCTTTGGATACT 3392
Query 3388 CGCATCCATCATGACGAAAAATCCGGGTGTTTTCACACAATGTGCATTGAATCTGATTCA 3447
|||||||||||||||||||||| || ||||| || |||||| |||||||||||||||||
Sbjct 3393 AGCATCCATCATGACGAAAAATCAGGTTGTTTCCATACAATGAGCATTGAATCTGATTCA 3452
Query 3448 AGCATCGTTGAGAGTGCAATCAGATATGCCTTTGTCCACGGGTCCTGCAAAGTTCCTTCT 3507
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3453 AGCAGCGTTGAAAGTGCAATCAGATATGCCTTTGTCCACGGGTCCTGCAAAGTTTCTTCT 3512
Query 3508 CTTTCCCTACCTGAAAACGAGGGTGTCTTTTCTTACAGGGTGTTCCATTCTCGATACCCC 3567
|| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 3513 CTCTCCCTACCTGAGAACGAGGGTGTCTTTTCTTGCAGGGTGTTCCATTCTCGATATCCC 3572
Query 3568 GAGCTGCATATGAGCGT--A-A---AGGTAACTTGTGCTCCCACATTTGAAAGAGATGAG 3621
|||||||| |||||| | | | ||||||| | ||||||||||| ||||||||| |||
Sbjct 3573 GAGCTGCAGATGAGCATAAAGATTCAGGTAACATCTGCTCCCACATCTGAAAGAGAGGAG 3632
Query 3622 ATTGGGTATTCGACACCGTATTC---AACAACTCCACCACCTGAATCAGGGATGCCTTCA 3678
| ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| ||||||
Sbjct 3633 AGTGGATATTCTACACCCCATTCAAAAACGACTCCACCACCTGAATCAGGGATTCCTTCA 3692
Query 3679 ATCACAAATCCATCTTCGACTCCATGTTCACAGTTTGGAGTTTTGGCCATTAGGTCATCA 3738
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3693 ATCACAAATCCATGGCCGACTCCATGTTCACAGTTTGGAGTATTGGCCATTAGGTCATCA 3752
Query 3739 TCATTGGCTCTCAGTAGCCAAACTGGCCTGATGGATATAGCACAGTACACTGA-GAGTTT 3797
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||| || |||
Sbjct 3753 TCATTGGCTCTCAGTAGCGAAACTAGCCTGATGGATATGGCACAGTACACTGAGGA-TTT 3811
Query 3798 AAAAGAAACAATCAATAGTGACGAAGAACTCCGAGTTGAATTAGATA-AGCGCATAAAAT 3856
|||||||| |||||||| ||||||||||| ||||||||||||||| | ||||| ||||||
Sbjct 3812 AAAAGAAAAAATCAATATTGACGAAGAACGCCGAGTTGAATTAGA-AGAGCGCCTAAAAT 3870
Query 3857 GTTTGCAGGATCAACATGAACATGCTGAGCAAGAATGTAGTAGGCTGCAAGCCTCTCTGG 3916
||||||||| ||||| |||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 3871 GTTTGCAGGCTCAACGTGAACATGCTGAGCAAGAGTGTAGTAGACTGCAAGCTTCTCTGG 3930
Query 3917 AACCTCTTGGTGCATCATTTCCAGAATGCCTATCCACCAAAGAATTAATGATGAAGCAAA 3976
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3931 AACCTCTTGGTGCACCGTTTCCAGAATGCCTATCCACCAAAGAATCAATGATGAAGCAAA 3990
Query 3977 TCGAAGATAAGCATCATGACACTGCAGCATCAGTGTTCTGTTGTCTGTACAGAAAGGCTC 4036
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3991 TCGAAGAGAAGCATCATGACACTGCAGCATCAGTGTTCTGTTGTCTGTACAGAAAGGCTC 4050
Query 4037 CGCCTCCACAGTCTCTGTTTCTGTCAAAGAAAGGAATGTTTGGCCTAGTAGCGCTTCTCG 4096
| ||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||| |
Sbjct 4051 CACCTCCACGGTCTCTGTTTCTGTCACAGAAAGGAATGTTTGGCGTTGTAGCGCTTCTAG 4110
Query 4097 GTTCAGTTGCCTCCACGTCACTAAGCAGGGTTTTATCTGAATATTTGGGGAAAGACACAA 4156
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 4111 GTTCAGTTGCCTCCACGTCGCTAAGCAGGGTTTTGTCTGAATATTTGGGGAAAGACACAA 4170
Query 4157 TGCTCTCGTTGGTATGCAAATCATCACAATTTGGACCTAAAAGCGATGAGTATCGCAAGC 4216
|||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 4171 TGCTTTCTTTGGTGTGCAAATCATCACAGTTTGGACCCAAAAGCGATGAGTATCGCAAGT 4230
Query 4217 TTCAATCTGAAGCAGCTAGCCTCGGACGATCTATCACCAATCGGTTTCTTGTTATTTGTC 4276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4231 TTCAATCTGAAGCAGCTAGCCTCGGACGATCTATCACCAATCGGTTTCTTGTTATTTGTC 4290
Query 4277 TTGATGCAATTAGACCTTGGAGGAACGGACTTGTGAAGAATGATCCTCAGAAGAGATTAG 4336
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4291 TTGATGCAACTAGACCTTGGAGGAACGGACTTGTGAGGAATGATCCTCAGAAGAGATTAG 4350
Query 4337 CTATGGATAACCCTTACCTGCCGAATGGAGATCCTATACCGGGCTTCAAAGGCTATGCCG 4396
| |||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
Sbjct 4351 CCATGGATAACCCTTACCTGCCGAATGGAGATCCTATACCCGGTTTCAAAGGCTACGCTG 4410
Query 4397 TGAACATGATAGATTTATCTTCAGAGGAGCTGAATATACAATCAAGCTCGGGTTACGGGC 4456
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 4411 TGAACATGATAGATTTAGCTTCAGAGGAGCTGGATATACAATCAAGCTCGGGTTACGGGC 4470
Query 4457 TTAGAGAGACGCTGTTCTATGGAGTTTTTGGAGAGTTGCAGGTATATGAGACCGGGGAGC 4516
|||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 4471 TTAGAGAGACACTATTCTATGGAGTTTTCAGAGAGTTGCAGGTATATGAGACCGCAGAGC 4530
Query 4517 ATCTTGAAGCAGCTCTTCCGCACATCAATGGTGGAGATGCTGTGTCTTTAGATGGTGTGA 4576
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 4531 ATCTTGAAGCAGCTCTTCCTCACATCAATGGTGGAGACGCTGTGTCTCTAGATGGTGTGA 4590
Query 4577 TCGCCAGAGAAAACGGTTTCATATACTCCGGTTGCTGTACACCGGAAATTCATTTTCCAA 4636
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 4591 TCGCCAGAGAAAACGGTTTCATATACTCTGGTTGCTGTACACCGGAAGTTCATTTTCCAA 4650
Query 4637 TAACCGTAACGGAGAGGCAAGAGAAGGCATTGGTGCAACTGGAAATAACAAGAGACAGGA 4696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4651 TAACCGTAACGGAGAGGCAAGAGAAGGCATTGGTGCAACTGGAAATAACAAGAGACAAGA 4710
Query 4697 AGAGAAAGGTTGAGCAGATGATGACTGAGGAGAATTGTAAGTTGCGTAAGGT-GGTGAAA 4755
|||||||| |||| |||||||||||||||||||| || |||||| | ||| |||||||
Sbjct 4711 AGAGAAAGACTGAGGAGATGATGACTGAGGAGAATCGTTCGTTGCGCA-GGTTGGTGAAA 4769
Query 4756 AAGTTGAAGAAGGCAAATGAGAAATACCAACATTTTACTGCTATGGTAGCAGACTCTT 4813
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 4770 AAGTTGAAGAAGGCAAATGAGAAATACCAAAATTTTACTGCTATGG---CAGACTCTT 4824
Score = 1061 bits (574), Expect = 0.0
Identities = 677/728 (93%), Gaps = 2/728 (0%)
Strand=Plus/Plus
Query 38 AGATGAGCAGCAGGCGATCAGTGAAGAGATCATTGATTCTTGATGATGATGAAGATGAAG 97
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 28 AGATGAGCAGCAGGCGATCAGTGAAGAGATCATTGGTTCTTGATGATGATGACGATGAGG 87
Query 98 ATATATTCTACACCTTCAAGGTCCTTCTACCAAACGGCACTAGTGTGAAACTCACTGTTA 157
|||||||||||| |||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 88 ATATATTCTACAACTTCAAGGTCCTTCTACCTAATGGCACTAGTGTGAAACTCACACTGA 147
Query 158 ATAACCCAGACCCTGAGATGTCGATGCAGAATTTTGTCAACCTGGTGAAGAAGGAGTACG 217
| |||||||| || ||||| ||||||||| |||||||||| |||||||||||||||| |
Sbjct 148 AAAACCCAGAACCGGAGATCTCGATGCAGTCTTTTGTCAACTTGGTGAAGAAGGAGTATG 207
Query 218 ATAATGCGCGTAAAGATTGTGTTTTGTTGTCTAAGAGGACGAAGGTTGATTGGAACTCAG 277
||||||| || ||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 208 ATAATGCACGAAAAGATTGTCTTTTGATGTCTAAGAGGATGAAGGTTGATTGGAACTCAG 267
Query 278 GCGGAAAGTTTTATCTTGAGTCAAATGGTGATAAGATGAAAGGCATTGTTCGCTTTGCTG 337
||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 268 GCGGAAAGTTTCATCTGGAGTCAAATGGTGGGAAGATGAAAGGCATTGTTCGCTTTGCTG 327
Query 338 CGTTTAAGCCCAACTTGTGCCATATTATACGTCTTGATGACGGCTCTGGTATAGCTTTCA 397
|||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||
Sbjct 328 CGTTTAAGCCTGACTTGTGCCACATAATACGTCTTGATGACGGTTCTGGTATAGCTTCCA 387
Query 398 CCATGTATGAGAACTTGTGGGATTTGACACCTGATACTGATCTGCTTAAAGAACTACCTG 457
||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| |
Sbjct 388 CCATGTATGAGAACTTGTGGGATTTGACACCGGATACTGACCTACTTAAAGAGCTACCAG 447
Query 458 AAAATTATAGCTTTGAGACAGCTCTCGCCGATCTAATAGACAATTCCTTGCAAGCTGTGT 517
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 448 AAAATTATAGCTTTGAGACAGCTCTCGCGGATCTAATAGACAATTCCTTGCAAGCTGTGT 507
Query 518 GGCCTTTTCGTGAAGTAGCTCGAAAACTGATAAGTGTGGATATTTCTGGTGACCGGATTA 577
|||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 508 GGCCTTATCGTGAAGGAGCTCGAAAACTGATTAGTGTGGATATATCTGGTGACCATATTA 567
Query 578 CAGTCTTTGATACCGGGAGAGGAATGGACAGTAGCG-AGGAAAATTCTATTGATAAATGG 636
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 568 CAGTCTTTGATACCGGGAGAGGAATGGACAGTAGCGAAGG-AAACTCTATTGATAAATGG 626
Query 637 GGTAAAATAGGGGCCTCAATACATAGATCTCAAAAAACCGGTGCTATTGGAGGCAAGCCA 696
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 627 GGTAAAATAGGGGCCTCACTACATAGATCTCAAAAAACCGGTGCCATTGGAGGCAATCCA 686
Query 697 CCATACCTTAAGCCATACTTTGGGATGTTTGGATACGGAGGTCCTTATGCTTCTATGTTC 756
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 CCATACCTTAAGCCATATTTTGGGATGTTTGGATACGGAGGTCCTTATGCTTCTATGTTC 746
Query 757 TTGGGAAG 764
||||||||
Sbjct 747 TTGGGAAG 754
> AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat protein
| chr3:9244325-9250768 FORWARD LENGTH=6444
Length=6444
Score = 398 bits (215), Expect = 3e-109
Identities = 264/288 (92%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 3305 AGCTGCCCGACTTCTGTGCTGCTGGTTCAAATCTCGTGAACCTCATTTTCCAAGTGACAG 3364
|||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||| |
Sbjct 1015 AGCTGCCCGACTGCTGTGCTGCTGGTACAAATCTCATGAACCTCATCTTCCAAGTGATGG 1074
Query 3365 ATTTAGATGGTTCTTTGGATACTCGCATCCATCATGACGAAAAATCC-GGGTGTTTTCAC 3423
| ||||||||||||||||||||| |||||||||||||||||||| || || ||||| ||
Sbjct 1075 AGTTAGATGGTTCTTTGGATACTAGCATCCATCATGACGAAAAA-CCAGGTTGTTTCCAT 1133
Query 3424 ACAATGTGCATTGAATCTGATTCAAGCATCGTTGAGAGTGCAATCAGATATGCCTTTGTC 3483
|||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1134 ACAATGAGCATTGAATCTGATTCAAGCAGCATTGAGAGTGCAATCAGATATGCCTTTGTC 1193
Query 3484 CACGGGTCCTGCAAAGTTCCTTCTCTTTCCCTACCTGAAAACGAGGGTGTCTTTTCTTAC 3543
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 1194 CACGGGTCCTGCAAAGTTTCTTCTCTCTCCCTACCTGAGAACGAGGGTGTCTTTTCGTGC 1253
Query 3544 AGGGTGTTCCATTCTCGATACCCCGAGCTGCATATGAGCGTAAAGGTA 3591
|||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1254 AGGGTGTTCCATTCTCGATATCCCGAGCTGCAGATGAGCGTGAAGGTA 1301
Score = 145 bits (78), Expect = 5e-33
Identities = 78/78 (100%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 3220 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 3279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 883
Query 3280 GAACGAGAGCTAAGACTT 3297
||||||||||||||||||
Sbjct 884 GAACGAGAGCTAAGACTT 901
Score = 145 bits (78), Expect = 5e-33
Identities = 78/78 (100%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 3220 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 3279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4809 GTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAGTCTCAAATTGAG 4868
Query 3280 GAACGAGAGCTAAGACTT 3297
||||||||||||||||||
Sbjct 4869 GAACGAGAGCTAAGACTT 4886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 240650825571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5