BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894371 Length=1479 Score E Sequences producing significant alignments: (Bits) Value AT5G24630.6 | Symbols: BIN4 | double-stranded DNA binding | chr... 1046 0.0 > AT5G24630.6 | Symbols: BIN4 | double-stranded DNA binding | chr5:8432384-8436170 REVERSE LENGTH=1875 Length=1875 Score = 1046 bits (566), Expect = 0.0 Identities = 803/907 (89%), Gaps = 57/907 (6%) Strand=Plus/Plus Query 176 ATGATAGTCCTTATAGAGAATCTGAAGCCGTTTCGTCTCTTCCTTTGCCTGATGATGACG 235 |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| Sbjct 466 ATGATAGTCCTTATAGGGAATCTGAAGTCATTTCGTCTCTTCCTTTGCCTGATGATGACG 525 Query 236 GTGACGACACCACGATTCTTGAGAAAGAATCTGTGGAGTCTCAAGAATCTGTCGAGTTAC 295 |||||| || | ||| | | ||| | ||| | ||||||||| ||| | Sbjct 526 GTGACG-----AC-A---TTGTG---G-TTCT-T-GAG--AC-AGAATCTGTGGAG-T-- 564 Query 296 TACTGTCTAGGAAGAATTCCGAAACGAATCTTGTGATGAAGCAAGTGAGTATCGAGCAGG 355 ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 565 TACTGACTAGGAAGAATTCCGAAACGAAGGTTGTGACGAAGCAAGTGAGTATCGAGCAGG 624 Query 356 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTG-A-A-------G--GGG- 403 |||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct 625 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTGAAGATTCGTGTGCAGGGA 684 Query 404 AGCAGAATGGGAACAACGTTGA-TGGGGAAAAACTCTCTACCAAGCATAAGGATGCTCAA 462 || ||||||| ||||||||||| | | ||||||||||||| ||||||||||||||||||| Sbjct 685 AGGAGAATGGAAACAACGTTGACT-GTGAAAAACTCTCTAGCAAGCATAAGGATGCTCAA 743 Query 463 GGAGGAGATGATTCTGTATGGCTGGTCTCATCTGATTCTGAACCATCCTCTAGTGCTCCG 522 ||||||| ||||||||||||||| ||||||||||||||||| |||| | | | |||| Sbjct 744 GGAGGAGCTGATTCTGTATGGCTTGTCTCATCTGATTCTGAGCCAT-C-C---T-CTCCT 797 Query 523 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGAGGATTTTGTTCTTGATGCTACA 582 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 798 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGCGGATTTTGTTCTTGAAGCTACA 857 Query 583 GAGGAAGAACCTGCAGTTAAGAAAGTTCGAAAGGAAAAATCTCCAAAAACAAAGTCAAAG 642 ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 858 GAGGAAGAACCAGCAGTTAAGACAGTTCGAAAGGAAAAATCTCCAAAAACAAAGTCAAAA 917 Query 643 AGCGGTCGCAAGACACCCAAGGAAGGAAATGGTGCACAGAAAATTTTTAAAAGTGAAGAT 702 ||| |||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||| Sbjct 918 AGCAGTCGCAAGACACCCAAGGAAGGAAATAGTGCACAGGAAATTTTAAAAACTGAAGAT 977 Query 703 AAAGTTATTA-ATACCACTATAGCCGAGGAAGTAACAACGGAAAAATCTCCAGAAACAAA 761 |||| || | ||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 978 AAAGATAC-AGATACCACTATAGCCGAGCAAGTAACACCGGAAAAATCTCCAAAAACAAA 1036 Query 762 GTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAGTGCACA-GAAAATTTTTAAAA 820 ||| ||||||||||||||||||||||| ||||||||| ||||||| |||| |||| |||| Sbjct 1037 GTCAAAAAGCAGTCGCAAGACACCCAAGGAAGAAAATTGTGCACAAGAAA-TTTTAAAAA 1095 Query 821 GTGAAGATAAAGATACAGATAC-----CA----C--T-ATAGCCGAGGAAGGAACAACGG 868 |||||||||||||| |||||| || | | ||||||||||||| |||||||| Sbjct 1096 CTGAAGATAAAGATAAAGATACAGATACAGATACCATTATAGCCGAGGAAGTAACAACGG 1155 Query 869 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 928 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1156 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 1215 Query 929 AGGTGAATCGTACAAAGGTACTTGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 988 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1216 AGGTTAATCGTACAAAGGTACTCGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 1275 Query 989 ACATGGGGGCTGTTGGACGAGTAATTGTTTCAGACACAACCGGAGACATGTACTTGGACT 1048 ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| Sbjct 1276 ACATGGGGGCTGTTGGACGCGTGGTTGTTTCAGACACAACCGGGGACATGTACTTGGACT 1335 Query 1049 TGAAAGG 1055 ||||||| Sbjct 1336 TGAAAGG 1342 Score = 662 bits (358), Expect = 0.0 Identities = 385/398 (97%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 1083 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTAGTTAACGTAGG 1142 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1340 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTTGTTAACGTAGG 1399 Query 1143 TCAGACAGAGGCAAAGATTGAAGCTATTATGAATGACTTCATACAGCTGACACCACAATC 1202 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1400 TCAGACAGAGGCTAAGATTGAAGCTATTATGAATGACTTCATACAGCTGATACCACAATC 1459 Query 1203 TAATGTGTACGAGGCAGAAACAATGGTAGAAGGCACTCTGGAGGGATTTTCATTCGAATC 1262 |||||| |||||||||||||||||||| |||||||||||||| |||||| | |||||||| Sbjct 1460 TAATGTCTACGAGGCAGAAACAATGGTGGAAGGCACTCTGGAAGGATTTACGTTCGAATC 1519 Query 1263 AGATGATGAAACTAACAAAAACGCCAAGACTGCT-TCAAAGCCAGCTGATCAAAGTGGAG 1321 ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| || Sbjct 1520 AGATGATGAAAGTAACAAAAACGCCAAGACTGCTGT-AAAGCCAGCTGATCAAAGTGTAG 1578 Query 1322 GCACAGAGGAAGaaaccaacacaaaagccaaacccaaagccaaagcaaaaggcgaaactg 1381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1579 GCACAGAGGAAGAAACCAACACAAAAGCCAAACCCAAAGCCAAAGCAAAAGGCGAAACTG 1638 Query 1382 ttataggaaaaaagAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1639 TTATAGGAAAAAAGAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1698 Query 1442 GAAATTCTGCCCCTAAGAAGCCAAAATCCAAGAAATGA 1479 |||||||||||||||||||||||||| ||||||||||| Sbjct 1699 GAAATTCTGCCCCTAAGAAGCCAAAAGCCAAGAAATGA 1736 Score = 183 bits (99), Expect = 3e-45 Identities = 119/129 (92%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 741 GGAAAAATCTCCAGAAACAAAGTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAG 800 ||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||| Sbjct 890 GGAAAAATCTCCAAAAACAAAGTCAAAAAGCAGTCGCAAGACACCCAAGGAAGGAAATAG 949 Query 801 TGCACAGAAAATTTTTAAAAGTGAAGATAAAGATACAGATACCACTATAGCCGAGGAAGG 860 ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||| Sbjct 950 TGCACAGGAAATTTTAAAAACTGAAGATAAAGATACAGATACCACTATAGCCGAGCAAGT 1009 Query 861 AACAACGGA 869 |||| |||| Sbjct 1010 AACACCGGA 1018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72941391885 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5