BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894396
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24850.1 | Symbols: CRY3 | cryptochrome 3 | chr5:8535282-853... 2580 0.0
> AT5G24850.1 | Symbols: CRY3 | cryptochrome 3 | chr5:8535282-8538107
REVERSE LENGTH=1789
Length=1789
Score = 2580 bits (1397), Expect = 0.0
Identities = 1583/1673 (95%), Gaps = 11/1673 (1%)
Strand=Plus/Plus
Query 39 AAACCCACTTCGCAGATTCACTCTTCACCATCTTCACCTCTCAAACAAACCCTTTTCTTC 98
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1 AAACCCACTTCGCAGATTCACTCTTCACCATCTTCACCTCTCAAAGAAACCCCTTTCTTC 60
Query 99 TTCTTCTCTGTTCCTCTGCTCCGTCGCAACAATGAACGACCATATCCACCGTGTTCCAGC 158
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 61 CTCTTCTCTGTTCCTCTGCTCCGCCGCAAAAATGAACGACCATATCCACCGTGTTCCGGC 120
Query 159 TCTCAACGAGGAAGAGATTGATTCAGTCGCCATAAAAACATTTGAGAGATACGCATTACC 218
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCACCGAGGAAGAGATTGACTCCGTCGCCATAAAAACATTTGAGAGATACGCATTACC 180
Query 219 TTCTTCTTCC-ACG--AAAAGAAACGGCAAAGGAATAACGATTCTTTGGTTTAGAAACGA 275
|||||||||| || || ||||| || |||||| |||||||||| ||||| ||||||||
Sbjct 181 TTCTTCTTCCTCCGTTAAGAGAAAGGGGAAAGGAGTAACGATTCTCTGGTTCAGAAACGA 240
Query 276 TCTTAGAGTTCTTGATAACGACGCATTGTACAAAGCTTGGTCTTCCTCTGATACCCTTTT 335
||| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 TCTCAGAGTTCTTGACAATGACGCATTGTACAAAGCTTGGTCTTCCTCTGATACCATTTT 300
Query 336 GCCTGTTTACTGTCTCGATCCTCGTCTCTTTCACACTACTCATTTCTTTAACTTCCCTAA 395
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GCCTGTTTACTGTCTCGATCCTCGTCTCTTTCACACTACTCATTTCTTCAACTTCCCTAA 360
Query 396 AACCGGAGCTTTAAGAGGTGGTTTTCTTATGGAATGTTTGGTTGATTTGAGAAAGAATCT 455
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACCGGAGCTTTAAGAGGCGGTTTTCTTATGGAATGTTTGGTTGATTTGAGAAAGAATCT 420
Query 456 TATGAAAAGAGGATTGAATCTTCTTATTCGAAGTGGTAAACCTGAAGAGATTCTTCCTTC 515
||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 421 TATGAAACGAGGATTGAATCTTCTTATTAGAAGTGGTAAACCAGAAGAGATTCTTCCTTC 480
Query 516 TCTTGCTAAAGATTTTGGAGCTCATACAGTCTTTGCTCATAAAGAAACGTGTAGTGAGGA 575
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 481 TCTTGCTAAAGATTTTGGAGCTCGTACAGTTTTTGCGCATAAAGAAACGTGTAGTGAGGA 540
Query 576 GCTACATGTTGAAAGACTTGTGAATCAAGGTTTG-AAAGGAGTTGGAAATGGTACTAAGC 634
| || | ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 541 GGTAGACGTTGAAAGACTTGTGAATCAAGGTTTGAAAAGG-GTTGGAAATAGTACTAAGC 599
Query 635 TTGAGCTCATTTGGGGAAGTACTATGTATCACAAAGATGATCTTCCTTTTGATGTTTTTG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGAGCTCATTTGGGGAAGTACTATGTATCACAAAGATGATCTTCCTTTTGATGTTTTTG 659
Query 695 ATTTGCCTGATGTTTACACTCAGTTTCGTAAGTCCGTGGAAGCCAAGTGTAGTATCAGAA 754
| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 660 ACTTGCCTGATGTCTACACTCAGTTTCGTAAGTCGGTGGAAGCTAAGTGTAGTATCAGAA 719
Query 755 GCTCCACTCGCATTCCACTTTCTCTAGGGCCAACACCTTCTGTTGATGATTGGGGAGATG 814
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCTCTACTCGCATTCCACTATCTCTAGGGCCAACACCTTCTGTTGATGATTGGGGAGATG 779
Query 815 TTCCAACTCTTGAGCAACTTGGAATTGAACCACAAGAGGTGACCCGAGGAATGCGATTCG 874
|||||||||||||| ||||||| |||| || |||||||| ||| |||||||||||||||
Sbjct 780 TTCCAACTCTTGAGAAACTTGGGGTTGAGCCTCAAGAGGTAACCAGAGGAATGCGATTCG 839
Query 875 TGGGTGGTGAAAGTGCAGGAGTAGGCAGAGTATTTGAGTACTTTTGGAAGAAGGATCTAT 934
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 TTGGTGGTGAAAGTGCAGGAGTAGGCAGAGTATTTGAGTACTTTTGGAAAAAGGATCTAT 899
Query 935 TGAAAGTATATAAAGATACGAGAAACGGAATGTTGGGACCTGATTATTCGACGAAATTCT 994
|||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 900 TGAAAGTATACAAAGAGACGAGGAACGGAATGTTAGGACCTGATTATTCGACGAAATTCT 959
Query 995 CACCATGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGGTCCAAAGAT 1054
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTCCTTGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGGTCCAAAGAT 1019
Query 1055 ATGAAAAGGAAAGAGTAGCAAACAATTCAACATACTGGGTACTTTTTGAATTAATATGGA 1114
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1020 ATGAAAAGGAAAGAGTAGCAAATAATTCAACATACTGGGTACTTTTTGAACTAATATGGA 1079
Query 1115 GGGACTACTTTAGGTTTCTTTCAATTAAGTGTGGAAACTCCCTCTTTCATCTAGGTGGCC 1174
| || ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1080 GAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAGGTGGCC 1139
Query 1175 CGAGAAATGTGCAAGGGAAGTGGAGTCAAGATCAAAAACTATTTGAGTCTTGGAGAGATG 1234
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1140 CGAGAAATGTGCAAGGGAAGTGGAGCCAAGATCAGAAACTATTTGAGTCTTGGAGAGATG 1199
Query 1235 GCAAGACAGGGTATCCTCTTATAGATGCAAACATGAAGGAGTTATACACTACAGGTTTCA 1294
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1200 CCAAGACAGGGTATCCTCTTATAGATGCAAACATGAAGGAGTTATCCACTACAGGTTTCA 1259
Query 1295 TGTCAAATCGAGGCCGACAGATAGTTTGTTCGTTTCTTGTCCGGGACATGGGGTTGGATT 1354
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGTCAAATCGAGGCCGACAGATTGTTTGTTCGTTTCTTGTCCGGGACATGGGGTTGGATT 1319
Query 1355 GGCGCATGGGTGCAGAATGGTTTGAGACATGTCTATTAGACTATGATCCATGTTCTAATT 1414
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1320 GGCGTATGGGTGCAGAATGGTTTGAGACATGTCTATTAGACTATGATCCTTGTTCTAATT 1379
Query 1415 ACGGTAACTGGACCTATGGAGCAGGAGTCGGAAATGATCCCCGAGAAGACCGGTACTTCA 1474
| || ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1380 ATGGAAACTGGACCTATGGAGCAGGAGTTGGAAATGATCCACGGGAAGACCGGTACTTCA 1439
Query 1475 GCATTCCCAAACAAGCACAAAATTATGATCCAGAAGGAGAATACGTTGCGTTTTGGCTGC 1534
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCATTCCCAAGCAAGCACAAAACTATGATCCAGAAGGAGAATACGTTGCGTTTTGGCTGC 1499
Query 1535 AGCAGCTACGCCGGCTTCCGAAAGAGAAAAGACATTGGCCAGGGAGATTGATGTATATGG 1594
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AGCAGCTACGTCGGCTTCCGAAAGAGAAAAGACATTGGCCAGGGAGATTGATGTATATGG 1559
Query 1595 ACACAGTTGTGCCATTGAAGCATGGTCA------AATGGCTGGAGGGTCCAAGTCTGGTG 1648
|||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
Sbjct 1560 ACACAGTTGTGCCATTGAAGCATGGTAATGGTCCAATGGCTGGAGGGTCAAAGTCTGGGG 1619
Query 1649 GTGGTTTCAGAGGGAGTCACAGTGGGAGACGTTCTAGACACAATGGTCCTTAG 1701
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GTGGCTTCAGAGGGAGTCACAGTGGGAGACGTTCTAGACACAATGGTCCTTAG 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5