BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894498
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25770.3 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1696 0.0
> AT5G25770.3 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:8969215-8972125 REVERSE LENGTH=1597
Length=1597
Score = 1696 bits (918), Expect = 0.0
Identities = 1025/1078 (95%), Gaps = 2/1078 (0%)
Strand=Plus/Plus
Query 123 TATGGAATCGCCGATTACTCAAGCCCAAATGTTTAGATCGGAGTTTCTTCGTCTGCTTCA 182
|||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||
Sbjct 421 TATGGAATCGCCGATTACTCAACCCCAAATGTTTAGATTGCAGTTTCTTCGTCTTCTTCA 480
Query 183 GAGTCGACGATCACCCAAAGTTCCATTAATAGCCAATTCTTCAAATCCTGTCGAAAACCC 242
||||||||||||||| ||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 481 TAGTCGACGATCACCCCAAGTTCCATTAATAGCCGATTCTTCAAATCCTATCGAGAATCC 540
Query 243 TCTCTTTCAAGCTGATGTTCCTTCTACAAAAGCAATAGAGTCTTGTCCAAAAGAAAACAT 302
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 541 TCTCTTTCAAGCTGATGTTCCTTCTACCACAGCAATAGAGTCTTGTCCAAAAGAAAACAT 600
Query 303 TGGTAACTTAAAAGAAATGCTTAAAGAAGAAAACCTTCATTTGCACACTGAGGATTCAGA 362
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 TGGTAAGTTAAAAGATATGCTTAAAGAAGAAAACATTCATTTGCACACTGAGGATTCAGA 660
Query 363 GCAAGGGAAATTACCTTTACTTATTTTAAGCTTGAAAGAGAGGACTAAAGAAAGAAGGCC 422
|||||||||||||||||| ||||||||||||||||||||||| | | |||||| ||||||
Sbjct 661 GCAAGGGAAATTACCTTTGCTTATTTTAAGCTTGAAAGAGAGAAGTGAAGAAAAAAGGCC 720
Query 423 AGCGATTGTGTTTATGCATGGCACAAACACAAACAAAGAATGGTTAAGACCATGGCTTGA 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 AGCGATTGTGTTTATGCATGGCACAAACACAAACAAAGAATGGTTAAGGCCATGGCTTGA 780
Query 483 AGCATATGCTTCGCGGGGATATGTAGCCATCGGTTTAGACTCTCGGTACCACGGTGAACG 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 781 AGCATATGCTTCGCGGGGATATGTAGCCATCGGTTTAGACTCTCGTTACCACGGTGAACG 840
Query 543 TGCTGATTGCACAACTGCCTATCGAGATGCTCTTATATCATCTTGGAGAAATGGAAACAC 602
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGCTGATTGCAAAACTGCATATCGAGATGCTCTTATATCATCTTGGAGAAATGGAAACAC 900
Query 603 AATGCCTTTTATCTTTGATACTGTATGGGATTTGATCAAACTAGCTGAATATCTTACTCA 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TATGCCTTTTATCTTTGATACTGTATGGGATTTGATCAAACTAGCTGAATATCTTACTCA 960
Query 663 GAGGGATGATATAGACCCGAAAAGGATAGGAATCACCGGTATTTCGCTAGGAGGGATGCA 722
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGGGATGATATAGACCCGAAAAAGATAGGAATCACCGGTATTTCGCTAGGAGGGATGCA 1020
Query 723 TGCTTGGTTTGCTGCTGCAGCTGATACCCGCTATTCCGTGGCTGTCCCTTTGATCGGTGT 782
|||||||||||||||||||||||| || ||||||||||||| |||||| || ||||||||
Sbjct 1021 TGCTTGGTTTGCTGCTGCAGCTGACACTCGCTATTCCGTGGTTGTCCCATTAATCGGTGT 1080
Query 783 CCAGGGATTTAGATGGGCAATAGACAATGATGAGTGGGAAGCAAGAGTCAACAGTATAAA 842
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1081 TCAGGGTTTTAGATGGGCAATAGAGAATGATGAGTGGGAAGCAAGAGTCAACAGTATCAA 1140
Query 843 ACCTTTATTTGAAGAAGCAAGGATCGATCTCGGAAAGAATGTAATCGACAAAGAACTGGT 902
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 1141 ACCTTTATTTGAAGAAGCAAGGATTGATCTCGGAAAGAACATAATCGACAAAGAACTAGT 1200
Query 903 CGAGAAGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCTAAGTTCGATTCGCCTTACTC 962
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1201 CGAGAAGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCGAAGTTTGATTCACCGTACTC 1260
Query 963 ATTACCAGTGATTGCTCCGCGGCCTCTTTACATCCTTAATGGCGCAAATGATCCTCGATG 1022
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1261 ATTACCAGTGATTGCTCCACGGCCTCTTTACATCCTTAACGGCGCAAATGATCCTCGATG 1320
Query 1023 TCCTCTTGGCGGACTAGAAGTTCCGTTAAAGAGAGCTGAGAAAG-CGTATAAGGAAACTG 1081
||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||| |
Sbjct 1321 TCCTCTTGGCGGACTAGAACTTGCGTTAAAGAGAGCTGA-AAAGGCGTATAAGGAAACAG 1379
Query 1082 CTTCTCCTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGGCACGAAGTGACGAGTT 1141
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1380 CTTCTCCTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGACACGAAGCGACGAGTT 1439
Query 1142 TCATGATCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAAGAAGAAGATATGAC 1199
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1440 TCATGATCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAACAAGAAGATATGAC 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5