BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894990

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08570.1 | Symbols:  | Heavy metal transport/detoxification ...   715    0.0  


> AT4G08570.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr4:5454580-5456070 REVERSE LENGTH=1091
Length=1091

 Score =  715 bits (387),  Expect = 0.0
 Identities = 431/453 (95%), Gaps = 0/453 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGTGGAAGGAACTATGGAGTATATATCGGACTTTTTgaagaagaggaagaggaag  60
            ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||
Sbjct  96   ATGGGAGTGGAAGGAACGATGGAGTATATATCAGACCTTTTAAAGAAGAGGAAGAGGAAG  155

Query  61   aagaagaagCAACTGCAAACAGTAGCTCTCCGAGTTGCTCGTATCGACTGCGAAGGTTGT  120
            |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  156  AAGAAGAAGCAAATGCAAACAGTAGCTCTCCGTGTTGCTCGTATCGACTGCGAAGGCTGT  215

Query  121  GAACGTAAGATCAAACATATCCTCTCCGGTGTCAAAGAGGTGAAGTCAGTGGACGTAGAC  180
            |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct  216  GAACGTAAGATCAAACATGTCCTCTCCGGTGTCAAAGGGGTGAAGTCAGTGGACGTGGAC  275

Query  181  GTGAAGCTGCAAAAGGTAACGGTAACGGGATATATAGAGCCGAAGAAGGTTTTGGAGGCG  240
            || |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct  276  GTAAAGCTGCAGAAGGTAACGGTAACGGGATATATAGACCCAAAGAAGGTTTTGGAGGCT  335

Query  241  GCCAAGTCAACGAAGAAGAAAGTGGAGTTATGGCCGTATGTTCCTTACACGATGGTGGCG  300
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  336  GCCAAGTCAACGAAGAAGAAAGTGGAGTTATGGCCGTACGTTCCTTACACAATGGTGGCG  395

Query  301  AATCCGTACATATCTCAGGCGTATGACAAGAAGGCACCACCAAACATGGTTCGGAAAGTC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  396  AATCCGTACATATCTCAGGCGTATGACAAGAAGGCACCACCAAACATGGTTCGGAAAGTC  455

Query  361  CCCGACACGGCCTCTGTCAACGAGACCACCGTCGATGACTCTTACACCATTATGTTTAGC  420
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  456  CCCGACACGGCCTCTGTCAACGAGACCACCGTCGATGACTCTTACACTATTATGTTTAGC  515

Query  421  GATGAGAATCCTAATTCTTGCATTATCATGTAG  453
            || ||||| ||||||||||||  ||||||||||
Sbjct  516  GACGAGAACCCTAATTCTTGCGCTATCATGTAG  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5