BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895156

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10270.1 | Symbols:  | Wound-responsive family protein | chr...   396    6e-110
  AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr...  84.2    5e-16 


> AT4G10270.1 | Symbols:  | Wound-responsive family protein | chr4:6374734-6375210 
FORWARD LENGTH=477
Length=477

 Score =  396 bits (214),  Expect = 6e-110
 Identities = 254/273 (93%), Gaps = 3/273 (1%)
 Strand=Plus/Plus

Query  1    ATGAGTTCTACAAGCAAAGCATGGACGGTGGCAGTGAGCATCGGAGCTGTAGAGGCATTA  60
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  72   ATGAGTTCTACAAGCAAAGCATGGACAGTGGCAGTGAGCATCGGAGCCGTAGAGGCATTA  131

Query  61   AAAGACCAATTAGGTCTTTGTAGGTGGAACTACATACTCCGGTCAGTGAATCAACATCTA  120
            ||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||||| 
Sbjct  132  AAAGACCAACTAGGTCTTTGTCGGTGGAACTACATACTCCGGTCGGTTAATCAACATCTC  191

Query  121  CGGAACAACGTCAGATCTGTTTCTCAAGGGAAAAGGTTTTCTTCG---TCTGTCTCCGCC  177
            ||||||||||| |||||||||||||||||||||||||| ||||||   ||||||||||| 
Sbjct  192  CGGAACAACGTTAGATCTGTTTCTCAAGGGAAAAGGTTCTCTTCGTCTTCTGTCTCCGCA  251

Query  178  GCGGTTACCTCCTCCGGTGAGAGTGAGAAGGCGAAAAAGGCTGAAGAATCGCTTAGAACA  237
            || ||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||
Sbjct  252  GCCGTTACCTCCTCTGGTGAGAGCGAGAAGGCTAAGAAGGCTGAAGAATCTCTTAGAACA  311

Query  238  GTCATGTACTTGAGCTGTTGGGGTCCTAATTAA  270
            |||||||||||||||||||||||||||||||||
Sbjct  312  GTCATGTACTTGAGCTGTTGGGGTCCTAATTAA  344


> AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr4:6373097-6373536 
REVERSE LENGTH=440
Length=440

 Score = 84.2 bits (45),  Expect = 5e-16
 Identities = 51/54 (94%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  217  GCTGAAGAATCGCTTAGAACAGTCATGTACTTGAGCTGTTGGGGTCCTAATTAA  270
            |||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct  258  GCTGAAGAATCGCTGAGGACAGTCATGTACTTGAGCTGTTGGGGTCCTAGTTAA  311



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5