BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895358
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11720.1 | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063255-70... 2988 0.0
> AT4G11720.1 | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063255-7066878
FORWARD LENGTH=2248
Length=2248
Score = 2988 bits (1618), Expect = 0.0
Identities = 1973/2142 (92%), Gaps = 33/2142 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAACGCGATCGCGATGGCTTGTGTAATCGCCGGAGTTGTT-ATCGGAATGTTAAA 59
|||||||||||||| ||||||||| || |||||||| || || |||||||||| ||
Sbjct 37 ATGGTGAACGCGATTTTAATGGCTTGTATACTCGCCGGAATT-TTCGTCGGAATGTTCAA 95
Query 60 CGAAGTCGACGGAATCCAGATTTTATCTAAATCAAAGCTGGAGAAGTGTGAGAAAACATC 119
||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 96 CGAAGTCGACGGAATTCAGATTTTATCGAAATCAAAGCTCGAAAAGTGTGAGAAAACATC 155
Query 120 CGATTCAGGGAATCTAAATTGTTCAACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGG 179
||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 156 AGATTCTGGTAATCTCAATTGTTCCACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGG 215
Query 180 ATCCAGTGGAGGAGAGGCTTCGATCGTAGCGGAAATCGTGGAAGTTGAAGATAATTCGAG 239
|||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 216 ATCCAGTGGAGGAGAGGCTTCGATTGTAGCGGAGATCGTGGAGGTTGAAGATAACTCGAG 275
Query 240 TAGTAATATGCAAACTGTACGGATTCCACCGGTGATTACAGTGAATAAATCTGCAGCATA 299
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 276 TAGTAATATGCAAACCGTACGGATTCCACCGGTTATTACAGTGAACAAATCTGCAGCATA 335
Query 300 TGCTCTCTATGATCTTACTTACATTAGGGATGTACCTTACAAGCCTCAAGAGTAT-AGCG 358
||||||||||||||||||||||||||||||||||||||| || |||||||||||| | |
Sbjct 336 TGCTCTCTATGATCTTACTTACATTAGGGATGTACCTTATAAACCTCAAGAGTATCA-TG 394
Query 359 TTACGACTCGAAAGTGTGAAC-CTGATGCTGGACCTGATATTGTACAAATATGTGAGAGG 417
| ||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||
Sbjct 395 TCACGACTCGAAAGTGTGAACAC-GATGCTGGACCGGATATTGTACAAATTTGTGAGAGG 453
Query 418 TTGCGAGATGAGAAGGGCAATGTTTTGGAGCAGACTCAACCTATATGTTGTCCATGTGGA 477
||| ||||||||||||| |||||||| ||||||||||| || || |||||||||||||||
Sbjct 454 TTGAGAGATGAGAAGGGTAATGTTTTAGAGCAGACTCAGCCGATTTGTTGTCCATGTGGA 513
Query 478 CCGCAACGAAGAATGCCTTCATCTTGTGGAGATATTTTTGATAAGATGATAAAAGGGAAG 537
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 514 CCGCAACGAAGAATGCCTTCTTCTTGTGGAGATATTTTTGATAAGATGATTAAAGGGAAG 573
Query 538 GCAAATACCGCTCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCAGCATTGGA 597
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 574 GCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCGGGATTGGA 633
Query 598 CAACGGTCACTAGGATTTAGTGTGCGGGTTGAGTTAAAAACAGGAACTAGAGTTTCAGAA 657
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 634 CAACGGTCACTAGGATTTAGTGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCAGAA 693
Query 658 GTGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAA-TTTCCTCAAGGTTAA 716
|||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct 694 GTGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAACTTTC-TCAAAGTTAA 752
Query 717 TCTCATAGGAGACTTTGCTGGTTACACAAATATTCCTTCTTTCGAGGACTTCTATCTTGT 776
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 753 TCTCATAGGAGACTTTGGTGGTTACACAAGTATTCCTTCTTTCGAGGACTTCTATCTTGT 812
Query 777 AATCCCAAGAGAGGCGGCTGTAGCGGGACAACCAGGGAATTTAGGCGCAAATTACTCAAT 836
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 813 AATCCCAAGAGAGGCGGCTGAAGCGGGACAACCAGGGAGCTTAGGCGCAAATTACTCAAT 872
Query 837 GTGGATGCTCCTTGAGAGATTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGG 896
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GTGGATGCTGCTTGAGAGAGTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGG 932
Query 897 TGTTGGCTATGAAGCCTTT-AATAGTCAACCAAATTTCTGCTCTTCACCATATTGGAGTT 955
|||||| |||||||| ||| || | |||||||||||||||||||| |||||||||||||
Sbjct 933 TGTTGGTTATGAAGC-TTTCAACACCCAACCAAATTTCTGCTCTTCTCCATATTGGAGTT 991
Query 956 GCTTGCATAATCAACTATGGAACTTCCGTGAGGCAGATATTAACCGGATCAACCGAAACC 1015
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| ||||| |||
Sbjct 992 GCTTGCATAATCAACTATGGAACTTCCGTGAGTCAGATATAAACAGAATCGACCGACACC 1051
Query 1016 AACTTCCTTTATATGGACTGGAAGGAAGATTTGAGAGGATCAATCAACATCCAAACGCGG 1075
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 AACTTCCTTTATATGGACTTGAAGGAAGATTTGAGAGGATCAATCAACATCCAAACGCGG 1111
Query 1076 GGCCTCACTCGTTCTCCATTGGAGTCACAGAAACACTTAACACAAATCTGATGATAGAAC 1135
|||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1112 GGCCTCACTCGTTCTCAATTGGAGTCACGGAAACACTCAACACAAATCTAATGATAGAAC 1171
Query 1136 TAAGAGCTGATGATATTGAATACGTTTTCCAGAGGAG-CCCTGGTAAGATCATAAACATA 1194
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1172 TAAGAGCTGATGATATTGAATACGTTTTCCAGAGGAGTCCC-GGTAAGATCATAAACATC 1230
Query 1195 GCTATACCGACATTCGAGGCACTTACACAATTCGGAGTTGCTGCAGTTACAACCAAGAAT 1254
|| |||||||||||||| ||||||||||||||||||||||||||||| | || |||||||
Sbjct 1231 GCGATACCGACATTCGAAGCACTTACACAATTCGGAGTTGCTGCAGTCATAATCAAGAAT 1290
Query 1255 ACAGGTGAAGTAGAAGCATCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTT 1314
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 ACTGGTGAAGTAGAAGCGTCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTT 1350
Query 1315 GTTGAGGAGCAATTCTTCATTATAAAACCAAAAGCGGTTACAACTCGATCTTTTAAGCTG 1374
|||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1351 GTTGAGGAACAATTTTTCATTATAAAACCGAAAGCGGTTACTACTCGGTCTTTTAAGCTG 1410
Query 1375 TACCCGACGAAAGATCAGGCTGCAAAATATATATGCACAGCTATACTCAAGGATTCTCTG 1434
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1411 TACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGCTATACTCAAGGACTCTCAG 1470
Query 1435 TTCAGCGAAGTAGACAGAGCCGAGTGTCAATTCAGCACAACGGCTACTGTACTCGACAAT 1494
||||||||||||||| |||||||||||||||| || ||||||||||| ||||| ||||||
Sbjct 1471 TTCAGCGAAGTAGACCGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAAT 1530
Query 1495 GGAACTCAGGTTACTAATCCATTTCAAATTCCAGAGACTCGTCCTAAAGGTTTCTTTGAT 1554
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1531 GGAACTCAGGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT 1590
Query 1555 TCGATTAGGATAATGTGGACGAAACTCATCAATGGTTTAGTCGATTTCATCACCGGAGAC 1614
||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1591 TCGATCAGGATACTATGGACGAAAATCATCAATGGTTTAGTCGATTTCATCACCGGAGAT 1650
Query 1615 ACTTGCAGAAACAAATGCTCGAGTTTCTTCGACTTCAGCTGCCACATTCAATACGTTTGC 1674
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1651 ACTTGCAGAAACAAATGCTCGAGTTTCTTCGACTTCAGTTGCCACATTCAATACGTTTGC 1710
Query 1675 TTGAGCTGGATGGTTATGTTCGGCCTTCTCCTCGCTCTCATCCCAACCACTTGTGTCCTT 1734
|| ||||||||||||||||| || ||||||||||||||| |||||| |||||| | |||
Sbjct 1711 TTAAGCTGGATGGTTATGTTTGGTCTTCTCCTCGCTCTCTTCCCAATTACTTGTTTGCTT 1770
Query 1735 CTCTGGCTCTTGCACCAAAAGGGACTCTTTGATCCATTCTACGATTGGTGGGAAGATCAT 1794
|| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1771 CTTTGGCTCTTGCACCAAAAGGGACTCTTTGATCCATGCTACGACTGGTGGGAAGATCAT 1830
Query 1795 TTCGACTTAGACCATCATCGGAGATTGTTACCACCCACTAGAGAAGACGCTATAAACCGC 1854
||||| |||||||||||||||||||| ||||| | | | |||| ||||| | | ||||||
Sbjct 1831 TTCGATTTAGACCATCATCGGAGATTATTACC-CTC-C-AGAGCAGACGTTGTTAACCGC 1887
Query 1855 CGTCATCACCATCACCATCGCCAGCATCGGCATGGTGTCAAAACTCATAATCATCATCGT 1914
| ||||||||||||| | ||||||| ||| || | |||||||| ||||||
Sbjct 1888 CATCATCACCATCAC-A-----AGCATCGTCAT-----CA---C-CATAATCACCATCGT 1932
Query 1915 AGAACACACAAGAGACACAAACACCACCATAACCAAGACGACGACGTTTTGCAGAA--T- 1971
|| |||||| ||||||||||||| || ||| |||||||||||||| |||||||| |
Sbjct 1933 AGGACACACCAGAGACACAAACATCATCATGGTCAAGACGACGACGTATTGCAGAAGATG 1992
Query 1972 ATGCTTGAACGTGACCACAACGAGTCTCACTACTACCACCAACTTCACCGAGTCCATAAA 2031
||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1993 ATGCTTGAACGTGACCACAGCGACTCTCACTACTACCACCAACTTCATCGAGTCCATAAA 2052
Query 2032 GATAGCAAACAGAAGCAGCGTAGACGAGCCAAGCACGGGATCGTCCTGCCACGTGATGTG 2091
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2053 GATAGCAAGCAGAAGCAGCGTAGGCGAGCCAAGCACGGGATCGTCCTGCCACGTGATGTG 2112
Query 2092 CACGTGGATAGACGGAAGAGACAAAGGCTACGTGAGAGTTAA 2133
|||||||| |||| || || |||||| |||||||||||||||
Sbjct 2113 CACGTGGAAAGACAGAGGAAACAAAGACTACGTGAGAGTTAA 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105772548315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5