BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895553 Length=1023 Score E Sequences producing significant alignments: (Bits) Value AT4G04870.1 | Symbols: CLS | cardiolipin synthase | chr4:246167... 1504 0.0 > AT4G04870.1 | Symbols: CLS | cardiolipin synthase | chr4:2461674-2464143 REVERSE LENGTH=1395 Length=1395 Score = 1504 bits (814), Expect = 0.0 Identities = 966/1036 (93%), Gaps = 23/1036 (2%) Strand=Plus/Plus Query 1 ATGGCGATTTACAGATCTCTGAGAAAGCTAATTGAAATCAATCACCGGAAAACTAGACCA 60 |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| Sbjct 140 ATGGCGATTTACAGATCTCTAAGAAAGCTAGTTGAAATCAATCACCGGAAAACAAGACCA 199 Query 61 TTCTTCACCGCCGCCACCGCCGCATCGCCTTCCGGCGGAACCGTTTCTCTTATC-CCACC 119 |||||||||||||| | || | |||||||||||||||||||||| | | ||||| Sbjct 200 TTCTTCACCGCCGCTA------CA--G-CTTCCGGCGGAACCGTTTCTCTGA-CTCCACC 249 Query 120 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACAGCGTTTATCTCCGCTTTCGAAATGGTT 179 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 250 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACACCGTTTATCTCCGCTTTCGAAATGGTT 309 Query 180 CGTTCCTCTTCATGGACCTCTCTTCCTCTCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 239 |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 310 CGTTCCTCTTAATGGACCTCTCTTCTTATCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 369 Query 240 GACACCTTTGCATTGGCGCGGAAATGGCGCTATTTTGAAGAAGGTCGAAGCTCTGAATCT 299 |||||||||||| ||||||||||| ||| || ||||||| || ||||||||||||||||| Sbjct 370 GACACCTTTGCACTGGCGCGGAAACGGCTCTGTTTTGAAAAAAGTCGAAGCTCTGAATCT 429 Query 300 TAGATTGGATCGAATTAGAAGTAGAACTAGGTTTCCTAGACATTTAGGGTTACAGTCTGT 359 ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 430 TAGATTGGATCGAATTAGAAGCAGAACTAGGTTTCCGAGACAGTTAGGGTTACAGTCTGT 489 Query 360 GGTA-C---C--A---ACGGTGGATCGCAACGATTCGAAGGAAGAAGATGGTGG--AA-T 407 |||| | | | |||||||||||||||||||| ||||||||||||||||| || | Sbjct 490 GGTACCAAACATATTGACGGTGGATCGCAACGATTCCAAGGAAGAAGATGGTGGAAAATT 549 Query 408 ACTTAAGAGTTTTGTTAATGTCCCTAATTTGATATCAATGGCAAGATTAGTGTCTGGTCC 467 | | ||||||||||||||||| || ||| ||||||||||||| |||||||| |||||||| Sbjct 550 AGTCAAGAGTTTTGTTAATGTGCCGAATATGATATCAATGGCGAGATTAGTATCTGGTCC 609 Query 468 TGCGCTTTGGTGGATGATTTCGAATGAGATGTATACTTCTGCTTTCGTAGGCTTGACTGT 527 || ||||||||||||||| ||||||||||||||| ||||||||||| |||| ||| |||| Sbjct 610 TGTGCTTTGGTGGATGATCTCGAATGAGATGTATTCTTCTGCTTTCTTAGGGTTGGCTGT 669 Query 528 TTCTGGAGCTAGTGATTGGTTAGATGGTTACATGGCTCGGAGGATGAAGATTAATTCTGT 587 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 670 TTCTGGAGCTAGTGATTGGTTAGATGGTTACGTGGCTCGGAGGATGAAGATTAACTCTGT 729 Query 588 GGTTGGCTCTTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTCGCAGTAGC 647 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 730 GGTTGGCTCGTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTAGCAGTAGC 789 Query 648 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 707 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 790 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 849 Query 708 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCATTAAACTTGGACTGGAAGTGGAAAAA 767 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 850 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCACTAAACTTGGACTGGAAGTGGAAAAC 909 Query 768 TTGGAGTGACTTCTTCAACCTCGATGGTTCAAGCCCTCAGAAAGTAGAGCCATTGTTTAT 827 |||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| Sbjct 910 TTGGAGTGACTTCTTCAATCTAGATGGTTCAAGTCCTCAGAAAGTAGAACCATTGTTTAT 969 Query 828 AAGCAAGGTGAATACAGTTTTCCAGTTGGCTCTAGTCGCTGGTGCAATACTTCAACCCGA 887 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 970 AAGCAAGGTGAATACAGTTTTCCAGTTGACTCTAGTCGCTGGTGCAATACTTCAACCAGA 1029 Query 888 GTTTGGGAATCCAGATACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 947 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1030 GTTTGGGAATCCAGACACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 1089 Query 948 GACTATGGCTTCAACTGCAGCTTATGGGGTACAATACTGGAAGAAGAGACCTATCTCTAT 1007 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1090 GACTATGGCTTCAACTGCAGCTTATGGTGTACAATACTGGAAGAAGAGACCTATATCTAT 1149 Query 1008 GATTAAGAGATCATAG 1023 |||||||||||||||| Sbjct 1150 GATTAAGAGATCATAG 1165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50133678706 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5