BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895751
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02465.1 | Symbols: | unknown protein; Has 30201 Blast hits... 278 4e-74
> AT4G02465.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1080962-1081680
FORWARD LENGTH=426
Length=426
Score = 278 bits (150), Expect = 4e-74
Identities = 181/196 (92%), Gaps = 1/196 (1%)
Strand=Plus/Plus
Query 218 TAAGTGCTGCCTTGGTATGTTTGGCGGAGTTGGAA-TTTTATGGCCCAACAAGTTTCTTC 276
||| |||||| ||| || ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 219 TAATTGCTGCTTTGCTAAGTTTGGCGGAGTTGGAATTTTTATGGCCGAACAAGTTTCTTC 278
Query 277 ATGAAAGTTATTCTGGAGAAGAGATATGCAATGGCGTATCGGGCGGTTGATGCGGTCACT 336
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 279 ATCAAAGTTATTCTGGAGAAGAGATATGCAATGGCGTATCGGGCGATTGATGCGGTTACC 338
Query 337 GCTCACTTCTTGAGATTTCATAAGGAGACGAAAGTTATGCCTGTCATTTGGCACCAAACA 396
|||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 339 ACTCACTTCTTTAGATTTCATAAGGAGACGAATGTTATACCCGTCATTTGGCACCAAACA 398
Query 397 CTTCTTGCCTTTGTGC 412
||||||||||||||||
Sbjct 399 CTTCTTGCCTTTGTGC 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19604422110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5