BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895886
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01330.2 | Symbols: | Protein kinase superfamily protein | ... 2302 0.0
> AT4G01330.2 | Symbols: | Protein kinase superfamily protein
| chr4:550349-553016 FORWARD LENGTH=1986
Length=1986
Score = 2302 bits (1246), Expect = 0.0
Identities = 1384/1450 (95%), Gaps = 11/1450 (1%)
Strand=Plus/Plus
Query 1 ATGACGATGTCTATATTCAATCCTGATTCCATCAATAACGAGCTATCGAAACCAACATCG 60
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 375 ATGACGATGTCTATATTCAATCCTGATTCAATCAACAACGAGCTATCGAAACCAACATCG 434
Query 61 ATCTTTGGTCTCAAGCTTTGGGTCGTCATCGGAATTTTACTAGGATCTCTTATAGTCATC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ATCTTTGGTCTAAAGCTTTGGGTCGTCATCGGAATTTTACTAGGATCTCTTATAGTCATC 494
Query 121 GCTCTCTTCTTTCTCTCCCTTTGTTTAACCTCTCGCCGGAGAAACCGTAAGCCGCGTCAC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 495 GCTCTCTTCTTTCTCTCCCTCTGTTTAACCTCTCGCCGGAGAAACCGTAAGCCACGTCAC 554
Query 181 GCCGATTTCGCATCCGCCGCAGTAGCAACGCCGCCGATTTCAAAGGAGATTCAGGAGATC 240
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 555 GCCGATTTCGCATCCGCAGCCGTAGCAACGCCGCCGATTTCAAAGGAGATTCAGGAGATC 614
Query 241 GTTAGACCTCCGGCGCAAGACCATTACCATCCGACGCAGCCCGTTGCGGCGGAGATCCAA 300
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 615 GTTAGACCTCCTGCGCAAGACCATTGCCATCCGACGCAGCCCGTTGCGGCGGAGATTCAA 674
Query 301 GTCGATATAGGGAAGATCGAGCACCGTGTTGTGTTCTCCGATCGAGTCTCGAGTGGTGAA 360
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 675 GTGGATATAGGGAAGACCGAGCACCGTGTTGTGTTCTCGGATCGAGTCTCGAGTGGTGAA 734
Query 361 AGCAGAGGAACAGTGAGTGCTAGTGAAACGGCGTCGTATTCAGGTAGTGGTTGTGTTGGA 420
||||||||||| | || |||||||||||||||||||||||| |||||||||||||||
Sbjct 735 AGCAGAGGAAC---G-GT--TAGTGAAACGGCGTCGTATTCAGGGAGTGGTTGTGTTGGA 788
Query 421 CCTGAGGTTTCGCATCTTGGTTGGGGAAGATGGTATACTCTTAGAGAGCTTGAAGCGGCC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 789 CCTGAGGTTTCGCATCTTGGTTGGGGAAGATGGTATACTCTTAGAGAGCTTGAAGCAGCT 848
Query 481 ACGAATGGATTGTGTGAAGAGAATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 ACTAATGGATTGTGTGAAGAGAATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGT 908
Query 541 GGGATTTTAACTGATGGAACTAAAGTCGCTGTCAAGAATCTGCTTAACAATAGGGGTCAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 909 GGGATTTTAACTGATGGAACTAAAGTCGCTGTCAAGAATCTGCTTAACAACAGGGGTCAA 968
Query 601 GCGGAGAAGGAGTTTAGAGTGGAAGTGGAAGCTATCGGGCGTGTAAGGCATAAGAATCTC 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GCTGAGAAGGAGTTTAGAGTGGAAGTGGAAGCTATCGGGCGTGTAAGGCATAAGAATCTC 1028
Query 661 GTTAGGCTTTTAGGGTACTGCGTCGAAGGTGCATACAGGATGCTTGTGTATGACTACGTC 720
|||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1029 GTTAGGCTATTAGGATACTGCGTCGAAGGAGCATACAGGATGCTCGTGTATGACTACGTC 1088
Query 721 GATAATGGCAACTTGGAGCAATGGATTCATGGTGATGTTGGTGACAAAAGTCC-TCTGAC 779
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||
Sbjct 1089 GATAATGGCAACTTGGAGCAATGGATTCATGGGGATGTTGGTGATAAAAGTCCGT-TGAC 1147
Query 780 TTGGGATATTCGTATGAACATAATACTTTGCATGGCGAAAGGCTTGGCGTATCTACATGA 839
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1148 TTGGGATATTCGTATGAACATAATACTTTGCATGGCGAAAGGATTGGCCTATCTGCATGA 1207
Query 840 GGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCG 1267
Query 900 TCAATGGAATGCTAAAGTATCAGATTTCGGACTCGCTAAGCTGTTGTTCTCTGAGAGCAG 959
||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 1268 TCAATGGAATGCTAAGGTATCAGATTTTGGACTTGCTAAGCTCTTGTTCTCCGAGAGCAG 1327
Query 960 TTACGTGACAACCCGTGTAATGGGGACTTTTGGATATGTTGCACCTGAGTATGCTTGCAC 1019
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1328 CTACGTGACAACCCGAGTAATGGGAACTTTTGGATATGTTGCGCCTGAGTATGCTTGCAC 1387
Query 1020 GGGAATGCTGACAGAAAAGAGTGATATCTATAGTTTTGGGATATTAATCATGGAGATTAT 1079
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1388 CGGAATGTTGACAGAAAAGAGTGATATCTATAGTTTTGGGATATTAATCATGGAGATAAT 1447
Query 1080 AACCGGAAGAAACCCTGTCGATTATAGTAGACCTCAAGGAGAGGTGAATTTGGTTGAGTG 1139
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1448 CACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGGTGAATTTGGTTGAGTG 1507
Query 1140 GCTGAAAACAATGGTTGGAAACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GCTGAAAACAATGGTTGGAAACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGA 1567
Query 1200 ACCACCAACTTCAAAAGCTCTTAAACGTGTGTTGCTCGTCGCGCTGCGGTGTGTGGATCC 1259
||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1568 ACCGCCCACTTCAAAAGCTCTTAAACGCGTGTTGCTCGTCGCGCTGCGTTGTGTGGATCC 1627
Query 1260 GGACGCGAATAAGAGACCTAAAATGGGTCATATTATACACATGCTTGAAGCTGAAGATTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1628 GGACGCGAATAAGAGACCTAAAATGGGTCATATTATACACATGCTTGAAGCTGAAGACTT 1687
Query 1320 GTTCTATCGTGAC--G-AACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTATAACCA 1376
||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1688 GTTCTATCGTGACCAGGAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCA 1747
Query 1377 GCCACAGACTGAAGTTTCTGCGGCTGCAGCTGAGACGAGCGAAAGTGACAGTTCAAAAGA 1436
||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1748 GCCACGGACTGAAATTTCACCGGCTGTGGCTGAGACGAGCGAAAGTGACAGTTCAAAAGA 1807
Query 1437 CCGAAGATAA 1446
||||||||||
Sbjct 1808 CCGAAGATAA 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5