BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895890
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01280.2 | Symbols: | Homeodomain-like superfamily protein ... 1286 0.0
> AT4G01280.2 | Symbols: | Homeodomain-like superfamily protein
| chr4:535241-537322 FORWARD LENGTH=1427
Length=1427
Score = 1286 bits (696), Expect = 0.0
Identities = 859/932 (92%), Gaps = 34/932 (4%)
Strand=Plus/Plus
Query 1 ATGGTGTCCGTAAACCCTAGACCTAAGGGTTTTCCAATGTTCGATCCCGT-GAACATGAG 59
|||||||||||||||||||||||||||||||||||| | |||||| || | ||| |||||
Sbjct 48 ATGGTGTCCGTAAACCCTAGACCTAAGGGTTTTCCAGTTTTCGATTCC-TCGAATATGAG 106
Query 60 TTTACCAGGCTCCGATGGATTTGGTTCCAATCCGATTGCTACGATTCCGGCCACC-GGAC 118
||||||| ||||||||||||||||||| | |||| || ||| ||| ||| | ||
Sbjct 107 TTTACCAAGCTCCGATGGATTTGGTTCGATTCCG---GCCACG-GGACGG--ACCAGTAC 160
Query 119 GGGTGTCGTTTTCTGAGGATCCGACTACGAAGATTCGGAAGCCGTACACAATCAAGAAGT 178
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 161 -GGTGTCGTTTTCTGAGGATCCGACGACGAAGATTCGGAAGCCGTACACAATCAAGAAGT 219
Query 179 CGAGAGAGAATTGGACAGATCAAGAACACGATAAATTTCTAGAAGCTCTCCACTTATTCG 238
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 220 CGAGAGAGAATTGGACAGATCAAGAGCACGATAAATTTCTAGAAGCTCTTCACTTATTCG 279
Query 239 ATAGGGATTGGAAGAAGATAGAGGCATTTGTAGGATCAAAAACAGTGGTTCAGATACGAA 298
|||||||||||||||| ||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 280 ATAGGGATTGGAAGAAAATAGAAGCCTTTGTTGGATCAAAAACAGTAGTTCAGATACGAA 339
Query 299 GCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTGCTAACGAACATCTTCCAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTGCTAACGAACATCTTCCAC 399
Query 359 CTCCTCGACCAAAGAGGAAAGCGAGTCATCCTTATCCTATAAAGGCTCCTAAAAATGTTG 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CTCCTCGACCTAAGAGGAAAGCGAGTCATCCTTATCCTATAAAGGCTCCTAAAAATGTTG 459
Query 419 CTTTTACCTCCCACGTCCTTCCATCTTCGAGCACACTACCTTTGCTTGAGCCTGGTTATT 478
||| ||||| | | || || |||||||| ||| |||| |||||||||||||||||||
Sbjct 460 CTTATACCT----C-T-CTCCCGTCTTCGAGTACATTACCGTTGCTTGAGCCTGGTTATT 513
Query 479 TGTACAGCTCTGATTC-ACAGCCGTTGCTGGGAAACCAGGCTGTTTGTGCATCTAGCTCT 537
|||| ||||||||||| | || | ||| ||||||||||||||||||||||||||| ||||
Sbjct 514 TGTATAGCTCTGATTCGA-AGTCATTGATGGGAAACCAGGCTGTTTGTGCATCTACCTCT 572
Query 538 TCTTCGTGGAATCATGAATCAACGAATCTTCTGCCAAAACCGGTGATTGAAGTTGAGGAA 597
|||||||||||||||||||| || || |||||||||||||||||||||||| ||||||
Sbjct 573 TCTTCGTGGAATCATGAATCGAC-AA--ATCTGCCAAAACCGGTGATTGAAGTAGAGGAA 629
Query 598 CCGGGAGTCTCGGCCACGGCTCCTCTCCCAAAGAATCGCTGCAGTA-AGGAAGATACACG 656
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
Sbjct 630 CCGGGAGTCTCGGCCACGGCTCCTCTCCCAAATAATCGCTGCAG-ACAGGAAGATACA-G 687
Query 657 -GAGGGTACGAGCAGTGACAAAGCCAAATGACGAAGAAAGTTGCGAAAAGCCACATAGAG 715
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 688 AGAGGGTACGAGCAGTGACAAAGCCAAATAACGAAGAAAGTTGTGAAAAGCCACATAGAG 747
Query 716 TGATGCCGAATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTCTTTGATCCCAACACAT 775
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 748 TGATGCCGAATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTCTTCGATCCCAACACAT 807
Query 776 CAGGCCACCTCCAGAGATTAAAGCAGATGGATCCAATAAATATGGAAACGGTTCTTTTAC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CAGGCCACCTCCAGAGATTAAAGCAGATGGATCCAATAAATATGGAAACGGTTCTTTTAC 867
Query 836 TGATGCAAAACCTGTCTGTAAATCTGACAAGTCCCGAGTTTGCAGAGCA--G-A--T--A 888
||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 868 TGATGCAAAACCTGTCTGTAAATCTGACAAGTCCCGAGTTTGCAGAGCAAAGGAGGTTGA 927
Query 889 T--CATCATACAGCGCTAAAGCTTTGAAATAG 918
| |||||||||||||||||||||||||||||
Sbjct 928 TATCATCATACAGCGCTAAAGCTTTGAAATAG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5