BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895903
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01120.1 | Symbols: GBF2, ATBZIP54 | G-box binding factor 2 ... 837 0.0
> AT4G01120.1 | Symbols: GBF2, ATBZIP54 | G-box binding factor
2 | chr4:481597-484483 REVERSE LENGTH=1557
Length=1557
Score = 837 bits (453), Expect = 0.0
Identities = 550/596 (92%), Gaps = 9/596 (2%)
Strand=Plus/Plus
Query 528 AGCTCCGAGAATGATGGCTCTAGCAATGGCAGTGATGTATTCGTCTTTCTTACCACAGGG 587
||||||||||||||||||||||||||||| ||||||| || | | | | |||
Sbjct 638 AGCTCCGAGAATGATGGCTCTAGCAATGGTAGTGATG-----GTAATAC--AACTGGGGG 690
Query 588 AGAGCAATCTCGGAGGAAAATAAGGCGAGAAAGATCACCAAGCACCGGTGAAAGACCCTC 647
||| |||||| ||||||||| ||||| | |||||||||||||||| ||||||||||||||
Sbjct 691 AGAACAATCTAGGAGGAAAAGAAGGCAACAAAGATCACCAAGCACTGGTGAAAGACCCTC 750
Query 648 ATCTCAAACCACTCCT-CCTCTTAGAGGTGAAAATGAGAAAGCCGATGTGACCATGGGGA 706
|||||||| || | || |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 751 ATCTCAAAACAGT-CTGCCTCTTAGAGGTGAAAATGAGAAACCCGATGTGACTATGGGGA 809
Query 707 CTCCCGTTATGCCCACAACAATGGGTTTCCAAAACTCTGCTGGCATGAACGGTGTCCCAC 766
|||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 810 CTCCTGTTATGCCCACAGCAATGAGTTTCCAAAACTCTGCTGGCATGAACGGTGTGCCAC 869
Query 767 AGCCATGGAATGAAAAAGAGGTTAAACGAGAGAAGAGAAAACAGTCAAACCGAGAATCTG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AGCCATGGAATGAAAAAGAGGTTAAACGAGAGAAGAGAAAACAGTCAAACCGAGAATCTG 929
Query 827 CTAGAAGGTCGAGACTGAGAAAGCAGGCTGAAACTGAACAACTCTCTGTCAAAGTTGACG 886
|||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 930 CTAGGAGGTCAAGACTGAGGAAGCAGGCTGAAACAGAACAACTATCTGTCAAAGTTGACG 989
Query 887 CACTAGTAGCTGAGAACATGACTCTGAGGTCCAAACTAGGCCAGCTAAACAATGAGTCTG 946
|| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 990 CATTAGTAGCTGAGAACATGTCTCTGAGGTCTAAACTAGGCCAGCTAAACAATGAGTCTG 1049
Query 947 AGAAACTACGGCTGGAGAACGAAGCTTTATTGGATCAACTGAAAGCGCAAGCAACTGGGA 1006
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1050 AGAAACTACGGCTGGAGAACGAAGCTATATTGGATCAACTGAAAGCGCAAGCAACAGGGA 1109
Query 1007 AAACAGAGAACCTTATCTCTCGAGTTGATAAGAACAACTCTGTATCAGGTAGCAAAAATG 1066
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1110 AAACAGAGAACCTGATCTCTCGAGTTGATAAGAACAACTCTGTATCAGGTAGCAAAACTG 1169
Query 1067 TGCAGCATCAACTGTTAAATGCAAGTCCAATAACAGATCCTGTCGCGGCCAGCTGA 1122
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1170 TGCAGCATCAACTGTTAAATGCAAGTCCGATAACCGATCCTGTCGCGGCTAGCTGA 1225
Score = 798 bits (432), Expect = 0.0
Identities = 476/497 (96%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAGCAACGAAGAAGGAAAACCCAC--A-AACTCTGATAAGCCATCGCAAGCTGCT 57
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 143 ATGGGTAGCAACGAAGAAGGAAACCCCACTAACAACTCTGATAAGCCATCGCAAGCTGCT 202
Query 58 GCTCCTGAGCAGGGTAATGTTCATGTGTATCATCATGACTGGGCTGCTATGCAGGCATAT 117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 GCTCCTGAGCAGAGTAATGTTCATGTGTATCATCATGACTGGGCTGCTATGCAGGCATAT 262
Query 118 TATGGGCCTAGAGTTGGTATACCTCAATATTACAACTCAAATGTGGCGCCTGGTCATGCT 177
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 263 TATGGGCCTAGAGTTGGTATACCTCAATATTACAACTCAAATTTGGCGCCTGGTCATGCT 322
Query 178 CCACCCCCTTATATGTGGGCTTCTCCATCGCCAATGATGGCTCCTTATGGGGCACCATAT 237
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 323 CCACCGCCTTATATGTGGGCGTCTCCATCGCCAATGATGGCTCCTTATGGAGCACCATAT 382
Query 238 CCACCGTTTTGCCCTCCTGGTGGAGTTTATGCTCATCCTGGTGTTCAAATGGGCTCACAA 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CCACCATTTTGCCCTCCTGGTGGAGTTTATGCTCATCCTGGTGTTCAAATGGGCTCACAA 442
Query 298 CTACAAGGTCCTGTTTCTCAAGCAACACCTGGTGTTACAACTCCTTTGACCATGGATGCA 357
| ||||||||||||||||||| || || |||| |||||||| ||||||||||| ||||||
Sbjct 443 CCACAAGGTCCTGTTTCTCAATCAGCATCTGGAGTTACAACCCCTTTGACCATTGATGCA 502
Query 358 CCAACTAATTCAGCTGGAAACTCGGATCACGGGTTCATGAAAAAACTGAAAGAGTTCGAT 417
||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 503 CCAGCTAATTCAGCTGGAAACTCAGATCATGGGTTCATGAAAAAGCTGAAAGAGTTCGAT 562
Query 418 GGACTTGCAATGTCAATAAGCAATAACAAAGTTGGGAGTGCTGAACATAGCAGCAGTGAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GGACTTGCAATGTCAATAAGCAATAACAAAGTTGGGAGTGCTGAACATAGCAGCAGTGAA 622
Query 478 CATAGGAGTTCTCAGAG 494
|||||||||||||||||
Sbjct 623 CATAGGAGTTCTCAGAG 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5