BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896093

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67360.1 | Symbols: ARA12 | Subtilase family protein | chr5:...   544    4e-154


> AT5G67360.1 | Symbols: ARA12 | Subtilase family protein | chr5:26871891-26874579 
REVERSE LENGTH=2689
Length=2689

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 331/349 (95%), Gaps = 1/349 (0%)
 Strand=Plus/Plus

Query  1    ACACACGACTCGGACTCCTCTCTTCCT-GGTCTTGATGAACACACCGCAGATCTGTTCCC  59
            |||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct  429  ACACACCACTCGTACTCCTCTCTTCCTCGGTCTCGACGAACACACCGCAGATCTGTTCCC  488

Query  60   TGAAACCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTTGATACCGGAGTTTGGCCCGA  119
            |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  489  TGAAGCCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTCGATACCGGAGTTTGGCCCGA  548

Query  120  GAGTAAAAGCTACTCCGACGAAGGATTCGGTCCGATTCCTTCGACTTGGAAAGGCGGATG  179
            ||||||||||||||||||||||||||||||||| ||||||||  | ||||||||||||||
Sbjct  549  GAGTAAAAGCTACTCCGACGAAGGATTCGGTCCTATTCCTTCCTCCTGGAAAGGCGGATG  608

Query  180  GGAGGCCGGAACTAATTTCACCGCTTCTCTCTGTAACCGTAAACTAATCGGAGCAAGATT  239
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  609  CGAGGCCGGAACCAATTTCACCGCTTCTCTCTGTAACCGTAAACTAATCGGAGCAAGATT  668

Query  240  CTTCGCTCGTGGTTACGAATCAACGATGGGACCAATAGACGAATCTAAAGAATCAAGATC  299
            |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  669  CTTCGCTCGTGGTTACGAATCAACGATGGGACCAATCGATGAATCTAAAGAATCAAGATC  728

Query  300  TCCTAGAGACGACGACGGTCACAGAACTCACACGTCATCAACCGCCGCT  348
            |||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct  729  TCCTAGAGACGACGACGGTCACGGAACTCACACCTCATCGACCGCCGCT  777


 Score =  202 bits (109),  Expect = 3e-51
 Identities = 125/133 (94%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  354   TATAATCTGGCATTACGTAACAACTGATCCTAATCCCACCGCTTCGATTTCAATCTTAGG  413
             ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  1479  TATAATCCGGCATTACGTGACTACTGATCCTAATCCCACCGCTTCGATTTCAATCTTAGG  1538

Query  414   AACCGTCGTTGGTGTTAAACCATCTCCGGTGGTTGCAGCGTTTAGCTCACGAGGACCGAA  473
             ||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct  1539  AACAGTCGTCGGTGTTAAACCATCTCCGGTTGTCGCAGCGTTTAGCTCACGTGGACCGAA  1598

Query  474   TTCGATTACACCG  486
             |||||||||||||
Sbjct  1599  TTCGATTACACCG  1611


 Score = 97.1 bits (52),  Expect = 2e-19
 Identities = 62/67 (93%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  484   CCGCTTGGACCACTGCTGCAGGACCAACCGGGCTCGCTTCCGATTCTCGCCGCGTGGAGT  543
             |||| ||||||  |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  1658  CCGCGTGGACCGGTGCTGCTGGACCAACCGGACTCGCTTCCGATTCTCGCCGCGTGGAGT  1717

Query  544   TCAATAT  550
             |||||||
Sbjct  1718  TCAATAT  1724



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5