BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896218
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14920.1 | Symbols: | Acyl-CoA N-acyltransferase with RING/... 353 2e-96
> AT4G14920.1 | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type
zinc finger protein | chr4:8531043-8535842 REVERSE
LENGTH=3531
Length=3531
Score = 353 bits (191), Expect = 2e-96
Identities = 286/328 (87%), Gaps = 22/328 (7%)
Strand=Plus/Plus
Query 747 ATTTCATGGTAACCGCT-TAGCTGAGATGCAGTTCATTGGAACTCGGCATGTCTACAGAC 805
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2679 ATTTCATGGTAACCG-TCTAGCTGAGATGCCGTTCATTGGAACTCGGCATGTCTACAGAC 2737
Query 806 ACCAAGGGATGTGCCGCCGGCTTTTCAGCGTTGTTGAATCAATGTCTTTTGATGTGAAAA 865
|||||||||||||||| |||||||||||||| |||| || || | |
Sbjct 2738 ACCAAGGGATGTGCCGGCGGCTTTTCAGCGTAGTTG----AA--TC-----A---G---- 2779
Query 866 CTCTTCAAAATCTCAAAGTTGAATTACTTGTTATCCCTGCAACTGCTGACTTAAGCCATG 925
|||||||| |||||||||| ||||||| |||||||||||||||| ||||| |||||||
Sbjct 2780 CTCTTCAACATCTCAAAGTCAAATTACTAATTATCCCTGCAACTGCCGACTTTAGCCATG 2839
Query 926 TTTGGATATCCAAATTCGGGTTTAAATATGTCGAGGATTCTCTGAAGAAAGAATTGCGGT 985
||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||
Sbjct 2840 TTTGGATATCCAAATTCGGGTTTCGACAAGTCGAGGATTCTCTGAAGAAAGAAATGCGGT 2899
Query 986 CCATGAATCTACTAGCCTTCCCTGGCATTGATGTGTTACAGAAAGAGCTGTTAGCACCAA 1045
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2900 CCATGAATCTGCTAACCTTCCCTGGCATTGATGTGTTACAGAAAGAGCTGTTAGCACCAC 2959
Query 1046 GACATGCCAAGTCTGCTG-CTGACACAG 1072
||||| || ||||||||| | |||||||
Sbjct 2960 GACATACCGAGTCTGCTGTC-GACACAG 2986
Score = 139 bits (75), Expect = 5e-32
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 411 GATGTTTCCTCATGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAGGGCAGT 470
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2145 GATGTTTCCTCTTGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAAGGCAGT 2204
Query 471 TGTCGAAGATGTTAGTCAAACTGTGGGTGCAAA 503
| | |||||||||| ||| ||||||||||||||
Sbjct 2205 TATTGAAGATGTTACTCAGACTGTGGGTGCAAA 2237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5