BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896256
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02955.1 | Symbols: MEE12 | maternal effect embryo arrest 12... 1652 0.0
> AT2G02955.1 | Symbols: MEE12 | maternal effect embryo arrest
12 | chr2:859453-862076 FORWARD LENGTH=2444
Length=2444
Score = 1652 bits (894), Expect = 0.0
Identities = 1113/1220 (91%), Gaps = 9/1220 (1%)
Strand=Plus/Plus
Query 1 ATGCTCTGCA-GAGAGTGCGACAACGACGCCTTTGACGAAGAAGACGACGGATATTTCTA 59
||| |||||| | |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 140 ATGATCTGCACG-GAGTGCGAAAACGACGCCTTTGACGAAGAAGACGACGGATATTACTA 198
Query 60 CTGCAAACGATGTGGTGTTCAGGCTGAAGATCTTATCCAAACCGGCGTCGACGATGGCGA 119
|||| ||||||| |||||||||| |||| |||| |||||||||||||||||||| |||||
Sbjct 199 CTGCCAACGATGCGGTGTTCAGGTTGAAAATCTGATCCAAACCGGCGTCGACGACGGCGA 258
Query 120 TTTAATCGGTGAAGGTGGAGGTACTCACGGCGCAATATATGACCCCAGATATCGCCGTAC 179
||||||||||||||||||||||||||| ||||| | ||| |||||| | ||||||| ||
Sbjct 259 TTTAATCGGTGAAGGTGGAGGTACTCAGGGCGCTCTGTATAACCCCAAACATCGCCGGAC 318
Query 180 TATAA-CACAACCAGTCACTCCTTCACAGCCTCGTTACACAGATGACACAATACGTTACA 238
| || |||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 319 T-GAACCACAACCAATCACTCCTTCACAGCCTCGTTTTACAGATGACACAAGCCGTTACT 377
Query 239 CTCATTTTAAATCTCAGCTTGAATCTGAAATCGAGAAGAAGAAGGATTTGCCCAGTGAAG 298
|||| |||||||||||| |||||||||||| || | ||| ||||| |||||| | ||||
Sbjct 378 CTCAGTTTAAATCTCAGTTTGAATCTGAAAACG-G--GAATAAGGAATTGCCCCGGGAAG 434
Query 299 TGAAGAGAGAGCCTGAGATTTATCTCGAGAAAGAGCCAACGGAGCCTGTGGATTTTGGAG 358
||||||||| |||||| | |||| |||| |||||||||||||||||||||||||||| ||
Sbjct 435 TGAAGAGAGCGCCTGACAGTTATGTCGATAAAGAGCCAACGGAGCCTGTGGATTTTGCAG 494
Query 359 CAGAGACTTTAAGTTATGAGGATTATTACGATGAAGCAAGAGATAGATATGTTAAAGCTT 418
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 495 CAGAGACTTTGAGTTATGAGAATTATTACGATGAAGCAAGAGATAGATATGTTAAAGCTT 554
Query 419 TTCTTATGATGATTACTTATCAGTGTGATGCTTTGGTTGACAAGTTTAATGTCACTCCTT 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TTCTTATGATGATCACTTATCAGTGTGATGCTTTGGTTGACAAGTTTAATGTCACTCCTT 614
Query 479 TGATTATTGGTTTGGTTGGACCTATCTCTTTACGTTACGTGGCTCTCTCTGGCGTTTACG 538
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 615 TGATTATTGGTTTGGTTGGACCTATCTCTTTGCGTTATGTGGCTCTCTCTGGCGTCTACC 674
Query 539 ATGATGATTGGGCGGATAAAGCCATTCGTGATTCCGAACTTCAATCAGAAGATGGTGAAG 598
|| | |||||||| |||| ||||||||||||||||| | ||| ||||||||||||||||
Sbjct 675 ATAAAGATTGGGCCAATAACGCCATTCGTGATTCCGAGCATCAGTCAGAAGATGGTGAAG 734
Query 599 TAAAAGATGCTAAGCGGCCTAAAACACAGAAAGCCGAGCCTCGTAACTTAGATGGTAAAA 658
|||||||||||||| ||| ||||| ||| ||||| ||||| |||||| ||||||||||||
Sbjct 735 TAAAAGATGCTAAGAGGCTTAAAAGACACAAAGCTGAGCCGCGTAACATAGATGGTAAAA 794
Query 659 GAGCAGTGACGATATGGGTTAGTCTGCTTAAAAAGACTCTGCCTTTATCGAGTTCTTTGG 718
||||||||||||||||| || || | |||||||||||| |||||||||||||||||||||
Sbjct 795 GAGCAGTGACGATATGGTTTGGTATACTTAAAAAGACTATGCCTTTATCGAGTTCTTTGG 854
Query 719 CGATATCTTTTCTTGCTTGTCACCATGCGGGAGCACCGGTTCTACCAACGGATATTGTGA 778
||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 855 TGATATCTTTCCTTGCTTGTCACCAAGCGGGAGCGCCTGTTCTACCCACGGATATTGTGA 914
Query 779 GATGGGCACGAGAAGGAAAGCTTCCGTATTTGTCTTGTTTTATCGATATTCGAGAGCAAA 838
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 915 GATGGGCACGAGAAGGAAAGCTTCCGTATTTGTCTTGTTTTCTCGATATTAGAGAGCAAA 974
Query 839 TGGGAGAGCGATCAGCTGCGTGTCCGGTGAAAACAAGCATAATGGCTAGGCCTTTTCAGA 898
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 975 TGGGAGAGCGATCAGCTGCGTGTCCGGTGAAAGTAAGTATAATGGCTAGGCCTTTTCAGG 1034
Query 899 TTATTTCTGCTCAGATGTTGGAAGCAGGAGCCGCT-TGCATTGCTGATATTATTGGTTTG 957
|||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||
Sbjct 1035 TTATTTCTGCTCAGATGTTGGAAGCACGAGCCTCTGTG-ATTGCTGATACTATTGGTTTG 1093
Query 958 CCTTTGCCTCCTGTAAATTTCTATGGTATAGCGTCAAACTATATAAAGCGGTTATCTATT 1017
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1094 CCTTTGCCTCCTGTGAATTTCTATGGTATAGCTTCAAACTATATAAAGCAGTTATCTATT 1153
Query 1018 CCTGAGGATAAGATTCTTGAACTGGTGCGTCTTATACAGAACTGGTCACTGCCTCCAGAA 1077
|||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||| ||
Sbjct 1154 CCTGAGGACAAGATTCTTGATCTGGCGCGTCTTATACAGAACTGGTCATTGCCTCCTGAG 1213
Query 1078 TTGTATCTATCGAAGAATGAGCTGAAGCTTCCTACCCGGGTGTGTGTCATGTCTATTCTT 1137
|| ||| |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 1214 TTATATTTATCGACGAATGAGCAGAAGCTTCCTAGCCGTGTGTGTGTCATGTCTATTCTG 1273
Query 1138 ATTGTAGCTATACGGATGCTTTATAACATAAATGGTTTGGGTGTGTGGGAACGGAGTTTG 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 ATTGTAGCTATTCGGATGCTTTATAACATAAATGGTTTGGGTGTGTGGGAACGGAGTTTG 1333
Query 1198 GAGTTTGTTAATGCTAGTGA 1217
| |||||| |||||||||||
Sbjct 1334 GGGTTTGTCAATGCTAGTGA 1353
Score = 1048 bits (567), Expect = 0.0
Identities = 721/789 (91%), Gaps = 36/789 (5%)
Strand=Plus/Plus
Query 1311 GAAAGCAACCAAATTCGATAC-CAAGGAGCTTCTGAAGAACCTTGAAGCTAAATATTATG 1369
||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1387 GAAAGCAACTGAATTCGATACTC-AGGAGCTTCTGAAGAACCTTGAAGCTAAATATCATG 1445
Query 1370 AGGTCGCTGCAGAAACCCTTGAATCCGAGAAGGATCTGCTGTCATATCTATCGCTCGGGA 1429
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1446 AGGTCGCTGCAGAAACCCTTGAATCCGAGAAGGATCTGGTGTCATATCTATCGCTCGGGA 1505
Query 1430 AAAACGAGTTCTTTGCTGGTTTGGAAGAAGATTTACCTGACGATACATACAGAACTGTTG 1489
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 1506 AAAACGAGTTCTTTGCTGGTTTAGAAGAAGATTCACCTGACGATACATACAGAATTGTTG 1565
Query 1490 ATAACCTGTGGAATGGTTATCCAAAAGAGGAGGAT-TTCGAACGGTGTAGGACTCCACCC 1548
||||| |||||||||||||||||||||| |||||| || ||| ||| || ||||
Sbjct 1566 ATAACTTGTGGAATGGTTATCCAAAAGACGAGGATATT-GAA---TGT----CT--ACCC 1615
Query 1549 AAGAGGGGGAGAGACTGGGATGATGATGTATCACTTAACCAACTTTCATTAGAAGATAGC 1608
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 1616 AAGAGGGGGAGAGACTGGGACGATGATGTATCACTTAACCAACTTTCATTATACGATAGC 1675
Query 1609 AAATTTAGCGATGGAAACAATCCTTGTAGTAGCCCTTCAAGGAGAAACGAAAGTGTATCA 1668
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1676 AGATTTAGCGATGGAAACAATCCTTGTAGTAGCTCTTCAAGGAGAAACGAAAGTGTATCA 1735
Query 1669 AT-GGATCGTGATTTATCTTCTTCAGAACACGGAGAATCATCATCACCAGAGAATCCTCA 1727
|| || || |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1736 ATAGG-TCTTGATTTATCTTCTTCAGAACACCGAGAATCATCATCACCAGAGAA-----A 1789
Query 1728 TCATCAAGAAGAGAAATTAAAGGAAAGAGCGATAAAAAGACTAATAACAGACATGGGAGA 1787
| | || ||||| | | |||||||||||||||||| ||||||||||||||
Sbjct 1790 T--T-AA-AAGAG--A-T---------AGCGATAAAAAGACTAATTACAGACATGGGAGA 1833
Query 1788 TAACTTGTTCTGTTACTTACCACCTCGTGTGAAGGTAAAGAGACTAGATTATCTACAATA 1847
| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1834 TGACTTGTTCTGTTACATACCACCTCGTGTGAAGGTAAAGAGACTAGACTATCTTCAGTA 1893
Query 1848 TGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCACGCAGATTACTACATTCT 1907
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1894 CGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCATGCAGATTACTACATTCT 1953
Query 1908 TTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATGCATAGAGGTGTGTT 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 TTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATGCATAGAGGTGTGTT 2013
Query 1968 GAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAGGTTTTGCATCTAAC 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 GAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAGGTTTTGCATCTAAC 2073
Query 2028 TCCACCTTTTATGACATGTGACCACTGTTGTGATGGTGGGAATGCTGGAGAAGATCAAGA 2087
|| |||| ||||||||||| | ||||||||||||| ||||||| |||||||||||||||
Sbjct 2074 TCGACCTCTTATGACATGTAAACACTGTTGTGATGATGGGAATATTGGAGAAGATCAAGA 2133
Query 2088 TGATTCATA 2096
||||| |||
Sbjct 2134 TGATTGATA 2142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103965328695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5