BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896277
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | ch... 839 0.0
> AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935336-936639 FORWARD LENGTH=1030
Length=1030
Score = 839 bits (454), Expect = 0.0
Identities = 593/658 (90%), Gaps = 17/658 (3%)
Strand=Plus/Plus
Query 53 CTGTGTATCGTTACCTGTGTCCTGTGAGGAA-AGCAGGGAGTATTATTGGGAGAGGTGGT 111
|||||||||||||| |||||| ||||| ||| ||||||||| || ||||||||||||||
Sbjct 1 CTGTGTATCGTTACTTGTGTCTTGTGA-GAAGAGCAGGGAG--TTCTTGGGAGAGGTGGT 57
Query 112 GAAATTGCAAAGCAGATTAGGTCTGAGACGAAAGCAAACATGAGGATTAACGAGGCTTTA 171
|| |||||||| |||||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 58 GAGATTGCAAAATAGATTAGGTCTGAGACTAAAGCAAACATGAGGGTAAACGAGGCATTG 117
Query 172 CCGGGTTGTGATGAGCGTGTTGTTACTATATATTCTAATAGCGAGGAGACG-AATCGTAT 230
|| |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 118 CCTGGTTGTGATGAGCGTGTTGTGACTATATATTCTAATAGCGAGGAGA-GAAATCGTAT 176
Query 231 TGAAGATG---ATGAGGATTTTGTTTGTCCTGCTTTTGATGCTCTTTTCAAGGTTCATGA 287
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 177 TGAAGATGACAATGAGGATTTTGTCTGTCCTGCTTTTGATGCTCTTTTCAAGGTTCATGA 236
Query 288 TATGATTGTTGCTGAAGAATTTGACAATGATGGTGATTATGATAACGATGATGAGTATAG 347
|||| |||||| ||||||||||||| |||||| ||||||| || || |||||||||||||
Sbjct 237 TATGGTTGTTGTTGAAGAATTTGACGATGATGATGATTATAATGACAATGATGAGTATAG 296
Query 348 TGCGAGACAAACA---GTTACTGTGAGGATGCTTGTTCCTTCGGATCAAATTGGTTGCCT 404
|| | |||||||| |||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 297 TGAGGGACAAACAGTTGTTACTGTGAGGATGCTTGTGCCTTCTGATCAAATTGGTTATCT 356
Query 405 TATTGGGAAAGGTGGA-CAAGTTATTCAAAAACTGCGTAATGACACTAATGCTCAGATTC 463
|||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 357 TATTGGCAAAGGTGGACCAA-TTATTCAAACGCTGCGTAATGACACTAATGCTCAGATTC 415
Query 464 GTGTTATAAATGATAATCTTCCCATTTGTGCTTTGGCTTTGAGTCATGATGAGCTTCTTC 523
|||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 416 GTGTTAGAAATGATAATCTACCCATGTGTGCTTTGGCATTGAGTCATGATGAGCTTCTTC 475
Query 524 AGATAATTGGAGATCCTTCTGCTGTTAGAGAAGCTCTTTACCAAGTTGCCTTTCTGCTTT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGATAATTGGAGATCCTTCTGCTGTTAGAGAAGCTCTTTACCAAGTTGCCTTTCTGCTTT 535
Query 584 ATGATAATCCGTCACGCTTTCAGAACTACTTTCTGTCTTCTTCTAGTAC--C-CTGCAGC 640
|| ||||||||||||| ||| ||||||||||||||||||| ||||||| | ||||| |
Sbjct 536 ATAATAATCCGTCACGATTTTAGAACTACTTTCTGTCTTCCTCTAGTAGTACACTGCAAC 595
Query 641 ATCAACCTGGTGGAATTCTAATGAGTCCTGCAATAACGAGTTCTCACAAAAATTACTC 698
||||||||||| ||||||| |||| ||||||| |||||| ||||| ||||||| |||
Sbjct 596 ATCAACCTGGTAGAATTCTGATGAATCCTGCAGTAACGACCTCTCATAAAAATTGCTC 653
Score = 453 bits (245), Expect = 2e-126
Identities = 277/292 (95%), Gaps = 3/292 (1%)
Strand=Plus/Plus
Query 1119 AATTGCTCGTGAGAATGAGGAGATGGTCCAAATAACAGGAAGTCTTGATGCAGCAATCAA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AATTGCTCGTGAGAATGAGGAGATGGTCCAAATAACAGGAAGTCTTGATGCAGCAATCAA 705
Query 1179 AGCTCTTACGCAAGTGATGCTGCGATTAAGAGCCAATGTATTTGACATGGATCGTGGTCT 1238
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 706 AGCTCTTACACAAGTGATGCTGCGTTTAAGAGCCAATGTATTTGACATGGATCGTGGTCT 765
Query 1239 TGTCTTGCTTCCAACTTTCTTTCCTTATATTTCTCAAACAATAGAGACTTCAAGCAAGCC 1298
|||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |
Sbjct 766 TGTCTTGCTTCCAACTTTATTTCCTTATATTTCTCAAACAATATAGACTTCGAGCAAGTC 825
Query 1299 TAGGCACAGAAAAGGCGAGAACCATCCTCATGGTTCCGAGGAAATTGCTAGGAATGAAGA 1358
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 826 TAGGCACAGAAAAGGCGAGAACCATCCTCATGGTTCAGAGGAATTTGCTAGGAATGAAGA 885
Query 1359 CTATGGTAGTCAAACGAACTTAAAGTCCCCAAGAAGAAACCGAGTTTATTGA 1410
||||||| |||| |||| |||| ||||||| |||||||||||||||||||
Sbjct 886 CTATGGT---CAAATGAACGTAAATTCCCCAATAAGAAACCGAGTTTATTGA 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5