BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896329

Length=852
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38270.1 | Symbols:  | F-box family protein | chr5:15289032-...   198    6e-50


> AT5G38270.1 | Symbols:  | F-box family protein | chr5:15289032-15290252 
FORWARD LENGTH=1221
Length=1221

 Score =  198 bits (107),  Expect = 6e-50
 Identities = 282/362 (78%), Gaps = 30/362 (8%)
 Strand=Plus/Plus

Query  78   CCCAGAGAAAGA-AAGATTTACaaa--aa-aaaGCCTCTTCGGACTCTCTGACAATAGCC  133
            ||| ||| |||| ||||||||||||  || |||  |  || ||||||||  || | ||| 
Sbjct  238  CCCGGAG-AAGACAAGATTTACAAAGGAACAAA--C-GTT-GGACTCTCCAACGACAGCT  292

Query  134  ATTATGTGGCTAGCTCAGGAAATTGGTTCTTGATGGTATATTCTTGTCAT-GATTTCTAT  192
            ||||| |||||||||| ||||| ||| ||||||||||| |||||  || | | |||||| 
Sbjct  293  ATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATC-TCGGTTTCTAC  351

Query  193  ATTTTTAACCTATTCACAG-GCAAAAAGAACAG-TCTTCCATCAATGAAGTATTCCATTC  250
            ||||||||||| || || | || |||||||  | ||||||||||||| ||| ||| ||||
Sbjct  352  ATTTTTAACCTGTTAAC-GAGC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTC  409

Query  251  GCGGTGGAAAAGTGAGATTCGAGCCAAGCGGTGA-CTATAGACTCTACAATTGGGGACAC  309
            |||||||||||||||||||||||| || |   || | || || | | ||| |||||||||
Sbjct  410  GCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGC-ATGGA-T-T-CAACTGGGGACAC  465

Query  310  TTCGTCGATCATTTTCGTA-GGATTTAC-GTGTCGAAAGACA-CCTTCGGATGCAAAAG-  365
            || ||||| | || ||||| || || || ||||| ||| | | || ||  | |  |||| 
Sbjct  466  TTTGTCGAACCTTCTCGTAAGG-TT-ACCGTGTCAAAA-ATAACCATCACACGGGAAAGT  522

Query  366  ATCAGCTGTTCTTTGGATAGACGAAAGGACAGGGGATTATT-TCGTTGCATGGATTTTGA  424
            |  ||||||||| ||||||||||| || ||||| |||| || | ||||| |||||||| |
Sbjct  523  AG-AGCTGTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGATTTTTA  580

Query  425  AC  426
            ||
Sbjct  581  AC  582


 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  477  CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA  512
            ||||||||||||||||||||||||||||||||||||
Sbjct  603  CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA  638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41543639569


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5