BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896329 Length=852 Score E Sequences producing significant alignments: (Bits) Value AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 198 6e-50 > AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252 FORWARD LENGTH=1221 Length=1221 Score = 198 bits (107), Expect = 6e-50 Identities = 282/362 (78%), Gaps = 30/362 (8%) Strand=Plus/Plus Query 78 CCCAGAGAAAGA-AAGATTTACaaa--aa-aaaGCCTCTTCGGACTCTCTGACAATAGCC 133 ||| ||| |||| |||||||||||| || ||| | || |||||||| || | ||| Sbjct 238 CCCGGAG-AAGACAAGATTTACAAAGGAACAAA--C-GTT-GGACTCTCCAACGACAGCT 292 Query 134 ATTATGTGGCTAGCTCAGGAAATTGGTTCTTGATGGTATATTCTTGTCAT-GATTTCTAT 192 ||||| |||||||||| ||||| ||| ||||||||||| ||||| || | | |||||| Sbjct 293 ATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATC-TCGGTTTCTAC 351 Query 193 ATTTTTAACCTATTCACAG-GCAAAAAGAACAG-TCTTCCATCAATGAAGTATTCCATTC 250 ||||||||||| || || | || ||||||| | ||||||||||||| ||| ||| |||| Sbjct 352 ATTTTTAACCTGTTAAC-GAGC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTC 409 Query 251 GCGGTGGAAAAGTGAGATTCGAGCCAAGCGGTGA-CTATAGACTCTACAATTGGGGACAC 309 |||||||||||||||||||||||| || | || | || || | | ||| ||||||||| Sbjct 410 GCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGC-ATGGA-T-T-CAACTGGGGACAC 465 Query 310 TTCGTCGATCATTTTCGTA-GGATTTAC-GTGTCGAAAGACA-CCTTCGGATGCAAAAG- 365 || ||||| | || ||||| || || || ||||| ||| | | || || | | |||| Sbjct 466 TTTGTCGAACCTTCTCGTAAGG-TT-ACCGTGTCAAAA-ATAACCATCACACGGGAAAGT 522 Query 366 ATCAGCTGTTCTTTGGATAGACGAAAGGACAGGGGATTATT-TCGTTGCATGGATTTTGA 424 | ||||||||| ||||||||||| || ||||| |||| || | ||||| |||||||| | Sbjct 523 AG-AGCTGTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGATTTTTA 580 Query 425 AC 426 || Sbjct 581 AC 582 Score = 67.6 bits (36), Expect = 2e-10 Identities = 36/36 (100%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 477 CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA 512 |||||||||||||||||||||||||||||||||||| Sbjct 603 CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA 638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41543639569 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5