BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896331 Length=1398 Score E Sequences producing significant alignments: (Bits) Value AT2G03560.1 | Symbols: | F-box family protein with a domain of... 475 4e-133 AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 466 3e-130 AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1... 267 3e-70 > AT2G03560.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:1079639-1081376 FORWARD LENGTH=1362 Length=1362 Score = 475 bits (257), Expect = 4e-133 Identities = 673/862 (78%), Gaps = 76/862 (9%) Strand=Plus/Plus Query 51 TGATTGGTCCAAGCTTTGTCCTGACCTTTTGCGAAAGATTATCGAAAGCTTGAACTCTAT 110 |||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| | Sbjct 60 TGATTGGTCCAAGCTTTGTCCTGATATTTTGAGAAAGATCATCGAAAGCTTGAGCTCTCT 119 Query 111 TGACTACCACCGAGCAAAACTCGTTTGCTCAGATTGGTATTCGGTTTGGAAAACATGCGT 170 || | ||||||||||| | ||||||||||||||||| || ||||||||||||||||| Sbjct 120 AGATTTTTACCGAGCAAAAATTGTTTGCTCAGATTGGTACTCCGTTTGGAAAACATGCGT 179 Query 171 GAAGCGGCCTCTGTATCCATGGCGGATC--ATAT--A-C----TATGATGA-T-G-A-TT 217 |||||||||||| ||||||||||||| |||| | | ||| || | | | | || Sbjct 180 AAAGCGGCCTCTGCGTCCATGGCGGATCATATATAGAGCAAAGTATTAT-ATTAGTACTT 238 Query 218 C-TTCGAGT-TTGTTCGATCCCAGA-GAAAACAAGTTTTACGAAACAAAACTCCTCGGAC 274 | || || | |||||||||||| || ||| ||||| |||| || || || ||||| Sbjct 239 CATT-GA-TGTTGTTCGATCCC-GACGAAGACAAGATTTA--TAA-GAATCTTGTCGGAG 292 Query 275 TTTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTACATTCTC 334 |||||||| | |||||| | |||||||||| ||||||||||||||||||| | |||||| Sbjct 293 TTTCTGACGAGAGCTATCGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGCAGATTCTC 352 Query 335 GTCTCGATTTCTATATTTTTAACCTGTTAACGTGCGAAAA-GATCAATCTTCC-CTCAAT 392 |||| |||||||||||| |||||||||||||| || |||| |||||||||||| | |||| Sbjct 353 GTCTTGATTTCTATATTGTTAACCTGTTAACGGGC-AAAAGGATCAATCTTCCAC-CAAT 410 Query 393 GGAGTCGT-CAATTCGCGGTGGAAAAGTAAGATTCGAGCCAAGCAGCGACTGTAGACAAG 451 |||||| | |||||| |||| | ||| ||||| | || ||||| | | | ||||| Sbjct 411 GGAGTC-TAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAAGCAAATA-TTTTTACAAG 468 Query 452 GCAAGTGGGGACACTTG-GTCGATCATTTTTGTAAGACT-CCCG--T--GT-CGAAAGAC 504 | | || ||| ||| | || || |||||| || || | || |||||| Sbjct 469 TC--G-AGGTACATTTGCTTTGA-CA--ATTGTAATTCTATTCGTATAAGTGAGAAAGA- 521 Query 505 A-TCTTGGGGTACAAAAGATCAGTTGTTCTTTGGATAAACGAGAGGGCAGGG-GATTATT 562 | | || | | ||||||| ||| |||||| |||||| |||||||| | ||| ||||||| Sbjct 522 AGTATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAGGAC-GGGAGATTATT 580 Query 563 TCGTTGCTTGGATTTTCAAGAACCAATATATGTTCACACACAAGAAAGGAGATGATTCTT 622 |||||||||||||||| || || || ||| |||||||||||||||||||||||||||| | Sbjct 581 TCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGATTCGT 640 Query 623 GGTGGAACTGGAATAATAATTGGGA-TA--CGT--TTCTTTTGGATTTGGCTTATAAGCA 677 |||| ||||||| || ||| | || | | || ||| |||||||||||||||| | Sbjct 641 GGTGT---TGGAATAGGAAGTGG-ACTAAACCTGGTTATTT-GGATTTGGCTTATAAGAA 695 Query 678 CAACAAGCTTTATCTGTATACTTACC-ACGATTCCATCAAGATTATTGATTTCTCTGGAG 736 ||||||||||||| | |||| | ||| | | | |||||||||| ||||||||||||||| Sbjct 696 CAACAAGCTTTATATCTATAAT-ACCGATAACTACATCAAGATTTTTGATTTCTCTGGAG 754 Query 737 ATTCCCCTAAAGAAGAAATaaaaaaaaaaCCCGTATTGGGATCATCCGT-TTCACTACCA 795 ||| |||||||||||| || |||| || ||||||| ||| ||| | |||| ||| | Sbjct 755 ATTACCCTAAAGAAGATATCGAAAATAA-CCCGTATCATAATCGTCC-TCTTCAGTAC-A 811 Query 796 CATTTCGC--A--AGGGGAA-TA-TATTTG-GAAGAGGAGAATAGCCATTCAGAAATCAG 848 || || | ||||||| | | |||| | | || |||||||| ||||||||||| | Sbjct 812 --TT-CGGGGACCAGGGGAAGTCCT-TTTGAGCA-AG-AGAATAGCGATTCAGAAATCGG 865 Query 849 GAGAGGTTTTGGTCATCTTGAG 870 ||||||||||| |||||||||| Sbjct 866 GAGAGGTTTTGATCATCTTGAG 887 > AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252 FORWARD LENGTH=1221 Length=1221 Score = 466 bits (252), Expect = 3e-130 Identities = 668/858 (78%), Gaps = 71/858 (8%) Strand=Plus/Plus Query 52 GATTGGTCCAAGCTTTGTCCTGACCTTTTGCGAAAGATTATCGAAAGCTTGAACTCTATT 111 ||||||||||| |||||||| || | || || ||| |||||||||||| ||||| | Sbjct 61 GATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACT 120 Query 112 GACTACCACCGAGC-AAAACTCGTTTGCTCAGATTGGTATTCGGTTTGGAAAACATGCGT 170 || | |||||||| |||||| |||||||||||||||||||| ||||||||||||||| Sbjct 121 GATTTTCACCGAGCAAAAACT-GTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGT 179 Query 171 GAAGCGGCCTCTGTATCCATGGCGGATCATATACTATGATGATGATTC-TTCGAGT-TTG 228 ||| |||||| | ||||||||||||||| ||| | | | ||||| || || | ||| Sbjct 180 GAA---GCCTCTTTGTCCATGGCGGATCATGTAC-GT-A-AAAGATTCATT-GA-TGTTG 231 Query 229 TTCGATCCCAGAGAAAACAAGTTTTACGAAA-CAA-AACTCCTCGGACTTTCTGACAATA 286 ||| | ||| ||||| ||||| ||||| ||| || || | | ||||| || || | | Sbjct 232 TTCAAACCCGGAGAAGACAAGATTTAC-AAAGGAACAA-ACGTTGGACTCTCCAACGACA 289 Query 287 GCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTACATTCTCGTCTCGATTTCT 346 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| Sbjct 290 GCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCT 349 Query 347 ATATTTTTAACCTGTTAACGTGCGAAAAGA-TCAATCTTCCCTCAATGGAGTCGTCAATT 405 | |||||||||||||||||| || |||||| | ||||||| ||||||||||| |||||| Sbjct 350 ACATTTTTAACCTGTTAACGAGC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAATT 408 Query 406 CGCGGTGGAAAAGTAAGATTCGAGCCAAGCAGCGACTGTAGACAAGG---CAAGTGGGGA 462 |||||||||||||| |||||||||| || | | || | || || || ||| |||||| Sbjct 409 CGCGGTGGAAAAGTGAGATTCGAGCAAAAC--C-AC-G-AG-CATGGATTCAACTGGGGA 462 Query 463 CACTTGGTCGATCATTTTTGTAAGACTCCCGTGTCGAAAG-A-C-ATCTTG-GGGTACAA 518 ||||| ||||| | || | ||||| | ||||||| ||| | | ||| ||| | || Sbjct 463 CACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTCAAAAATAACCATCACACGGG-A-AA 520 Query 519 A-AGATCAGTTGTTCTTTGGATAAACGAGAGGGCAGGGGATTATT-TCGTTGCTTGGATT 576 ||| | | ||||| |||||| ||||||| |||| |||| || | |||||||||||| Sbjct 521 GTAGAGC--T-GTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGATT 576 Query 577 TTCAAGAACCAATA-TATGTTCACACACAAGAAAGGAGATGATTCTTGGTGGAACTGGAA 635 || || | | || | ||||| || ||||||||||||||||||| |||||||||||||| Sbjct 577 TTTAACTATCGTTACT-TGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAA 635 Query 636 TAATAATTGGGATA-------C--G--TTTC--TTTT--GGATTTGGCTTATAAGCA-CA 679 ||| ||||| ||| | | ||| |||| |||||||||||| | | | || Sbjct 636 TAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACA-GAAACA 694 Query 680 ACAAGCTTTATCTGTATACTTACCACGATTC-CATCAA-GATTATTGATTTCTCTGGAGA 737 |||||||||| | || | |||| | || || |||||| | || |||||||||||||| | Sbjct 695 GCAAGCTTTATATCTACA-TTACTAAGAGTCACATCAAAG-TTGTTGATTTCTCTGGAAA 752 Query 738 T--TCCCCTAAAGAAGAAATaaaaaaaaaaCCCGTATTGGGATCATCCGTTTC-ACTACC 794 | |||| || |||| ||| | ||||| |||||||||||| |||||||||| | ||| Sbjct 753 TGATCCCATA--GAAGTAATCGATAAAAA-CCCGTATTGGGAACATCCGTTTCGA-TACT 808 Query 795 -ACATTTCGCAAGGGGAATATATTTGGAAGAGGAGAATAGCCATTCAGAAATCAGGAGAG 853 | | |||||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 809 TA-ACCAAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGAGAC 867 Query 854 GTTTTGGTCATCTTGAGT 871 |||||| | ||||||||| Sbjct 868 GTTTTGATTATCTTGAGT 885 Score = 104 bits (56), Expect = 2e-21 Identities = 106/128 (83%), Gaps = 12/128 (9%) Strand=Plus/Plus Query 882 AAGGGCACCGGTTCAAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGTTAA 941 ||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| | Sbjct 1017 AAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCA- 1075 Query 942 AGATGACGTTTCGCCA---TATTATA-TG-TG-T--T-CAAATTGCGGTGTCTTCGATCT 992 | |||||| | |||| |||||| | || | | ||||||| |||||||||||||| Sbjct 1076 -G-TGACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCT 1133 Query 993 TGCCACAA 1000 ||| |||| Sbjct 1134 TGCAACAA 1141 > AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1093264-1094481 FORWARD LENGTH=435 Length=435 Score = 267 bits (144), Expect = 3e-70 Identities = 174/188 (93%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 139 TCA-GATTGGTA-TTCGGTTTGGAAAACATGCGTGAAGCGGCCTCTGTATCCATGGCGGA 196 ||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 48 TCACGATTGGTATTTC-GTTTGGAAAACATGCGTGAAACGGCCTCTGTATCCATGGCGGA 106 Query 197 TCATATACTATGATGATGATTCTTCGAGTTTGTTCGATCCCAGAGAAAACAAGTTTTACG 256 |||||||||| |||||||||||||| |||||||| |||||| | ||| ||||| |||||| Sbjct 107 TCATATACTACGATGATGATTCTTCCAGTTTGTTTGATCCCGGTGAAGACAAGATTTACG 166 Query 257 AAACAAAACTCCTCGGACTTTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGGC 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 167 GGACAAAACTCCTCGGACTCTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGGC 226 Query 317 TCTTGATG 324 |||||||| Sbjct 227 TCTTGATG 234 Score = 84.2 bits (45), Expect = 3e-15 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 589 TATATGTTCACACACAAGAAAGGAGATGATTCTTGGTGGAACTGGAATAATAA-T-TGGG 646 ||| |||||||| ||||||||||||||||||||||||||||||||||| |||| | |||| Sbjct 348 TATTTGTTCACATACAAGAAAGGAGATGATTCTTGGTGGAACTGGAATGATAAGTATGGG 407 Query 647 A 647 | Sbjct 408 A 408 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68875147740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5